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Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast
Modularity in controlling gene expression artificially is becoming an essential aspect of synthetic biology. Artificial transcriptional control of gene expression is one of the most well-developed methods for the design of novel synthetic regulatory networks. Such networks are intended to help under...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132757/ https://www.ncbi.nlm.nih.gov/pubmed/25056312 http://dx.doi.org/10.1093/nar/gku651 |
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author | Mazumder, Mostafizur McMillen, David R. |
author_facet | Mazumder, Mostafizur McMillen, David R. |
author_sort | Mazumder, Mostafizur |
collection | PubMed |
description | Modularity in controlling gene expression artificially is becoming an essential aspect of synthetic biology. Artificial transcriptional control of gene expression is one of the most well-developed methods for the design of novel synthetic regulatory networks. Such networks are intended to help understand natural cellular phenomena and to enable new biotechnological applications. Promoter sequence manipulation with cis-regulatory elements is a key approach to control gene expression transcriptionally. Here, we have designed a promoter that can be both activated and repressed, as a contribution to the library of synthetic biological ‘parts’. Starting with the minimal cytochrome C (minCYC) promoter in yeast, we incorporated five steroid hormone responsive elements (SHREs) and one lac operator site, respectively, upstream and downstream of the TATA box. This allows activation through the testosterone-responsive androgen receptor, and repression through the LacI repressor. Exposure to varying concentrations of testosterone (to vary activation) and IPTG (to vary repression) demonstrated the ability to tune the promoter's output curve over a wide range. By integrating activating and repressing signals, the promoter permits a useful form of signal integration, and we are optimistic that it will serve as a component in future regulatory networks, including feedback controllers. |
format | Online Article Text |
id | pubmed-4132757 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-41327572014-12-01 Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast Mazumder, Mostafizur McMillen, David R. Nucleic Acids Res Synthetic Biology and Chemistry Modularity in controlling gene expression artificially is becoming an essential aspect of synthetic biology. Artificial transcriptional control of gene expression is one of the most well-developed methods for the design of novel synthetic regulatory networks. Such networks are intended to help understand natural cellular phenomena and to enable new biotechnological applications. Promoter sequence manipulation with cis-regulatory elements is a key approach to control gene expression transcriptionally. Here, we have designed a promoter that can be both activated and repressed, as a contribution to the library of synthetic biological ‘parts’. Starting with the minimal cytochrome C (minCYC) promoter in yeast, we incorporated five steroid hormone responsive elements (SHREs) and one lac operator site, respectively, upstream and downstream of the TATA box. This allows activation through the testosterone-responsive androgen receptor, and repression through the LacI repressor. Exposure to varying concentrations of testosterone (to vary activation) and IPTG (to vary repression) demonstrated the ability to tune the promoter's output curve over a wide range. By integrating activating and repressing signals, the promoter permits a useful form of signal integration, and we are optimistic that it will serve as a component in future regulatory networks, including feedback controllers. Oxford University Press 2014-08-18 2014-07-23 /pmc/articles/PMC4132757/ /pubmed/25056312 http://dx.doi.org/10.1093/nar/gku651 Text en © The Author(s) 2014. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Synthetic Biology and Chemistry Mazumder, Mostafizur McMillen, David R. Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast |
title | Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast |
title_full | Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast |
title_fullStr | Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast |
title_full_unstemmed | Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast |
title_short | Design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast |
title_sort | design and characterization of a dual-mode promoter with activation and repression capability for tuning gene expression in yeast |
topic | Synthetic Biology and Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4132757/ https://www.ncbi.nlm.nih.gov/pubmed/25056312 http://dx.doi.org/10.1093/nar/gku651 |
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