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Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest

The entire drug safety enterprise has a need to search, retrieve, evaluate, and synthesize scientific evidence more efficiently. This discovery and synthesis process would be greatly accelerated through access to a common framework that brings all relevant information sources together within a stand...

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Autores principales: Boyce, Richard D., Ryan, Patrick B., Norén, G. Niklas, Schuemie, Martijn J., Reich, Christian, Duke, Jon, Tatonetti, Nicholas P., Trifirò, Gianluca, Harpaz, Rave, Overhage, J. Marc, Hartzema, Abraham G., Khayter, Mark, Voss, Erica A., Lambert, Christophe G., Huser, Vojtech, Dumontier, Michel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer International Publishing 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4134480/
https://www.ncbi.nlm.nih.gov/pubmed/24985530
http://dx.doi.org/10.1007/s40264-014-0189-0
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author Boyce, Richard D.
Ryan, Patrick B.
Norén, G. Niklas
Schuemie, Martijn J.
Reich, Christian
Duke, Jon
Tatonetti, Nicholas P.
Trifirò, Gianluca
Harpaz, Rave
Overhage, J. Marc
Hartzema, Abraham G.
Khayter, Mark
Voss, Erica A.
Lambert, Christophe G.
Huser, Vojtech
Dumontier, Michel
author_facet Boyce, Richard D.
Ryan, Patrick B.
Norén, G. Niklas
Schuemie, Martijn J.
Reich, Christian
Duke, Jon
Tatonetti, Nicholas P.
Trifirò, Gianluca
Harpaz, Rave
Overhage, J. Marc
Hartzema, Abraham G.
Khayter, Mark
Voss, Erica A.
Lambert, Christophe G.
Huser, Vojtech
Dumontier, Michel
author_sort Boyce, Richard D.
collection PubMed
description The entire drug safety enterprise has a need to search, retrieve, evaluate, and synthesize scientific evidence more efficiently. This discovery and synthesis process would be greatly accelerated through access to a common framework that brings all relevant information sources together within a standardized structure. This presents an opportunity to establish an open-source community effort to develop a global knowledge base, one that brings together and standardizes all available information for all drugs and all health outcomes of interest (HOIs) from all electronic sources pertinent to drug safety. To make this vision a reality, we have established a workgroup within the Observational Health Data Sciences and Informatics (OHDSI, http://ohdsi.org) collaborative. The workgroup’s mission is to develop an open-source standardized knowledge base for the effects of medical products and an efficient procedure for maintaining and expanding it. The knowledge base will make it simpler for practitioners to access, retrieve, and synthesize evidence so that they can reach a rigorous and accurate assessment of causal relationships between a given drug and HOI. Development of the knowledge base will proceed with the measureable goal of supporting an efficient and thorough evidence-based assessment of the effects of 1,000 active ingredients across 100 HOIs. This non-trivial task will result in a high-quality and generally applicable drug safety knowledge base. It will also yield a reference standard of drug–HOI pairs that will enable more advanced methodological research that empirically evaluates the performance of drug safety analysis methods.
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spelling pubmed-41344802014-08-21 Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest Boyce, Richard D. Ryan, Patrick B. Norén, G. Niklas Schuemie, Martijn J. Reich, Christian Duke, Jon Tatonetti, Nicholas P. Trifirò, Gianluca Harpaz, Rave Overhage, J. Marc Hartzema, Abraham G. Khayter, Mark Voss, Erica A. Lambert, Christophe G. Huser, Vojtech Dumontier, Michel Drug Saf Current Opinion The entire drug safety enterprise has a need to search, retrieve, evaluate, and synthesize scientific evidence more efficiently. This discovery and synthesis process would be greatly accelerated through access to a common framework that brings all relevant information sources together within a standardized structure. This presents an opportunity to establish an open-source community effort to develop a global knowledge base, one that brings together and standardizes all available information for all drugs and all health outcomes of interest (HOIs) from all electronic sources pertinent to drug safety. To make this vision a reality, we have established a workgroup within the Observational Health Data Sciences and Informatics (OHDSI, http://ohdsi.org) collaborative. The workgroup’s mission is to develop an open-source standardized knowledge base for the effects of medical products and an efficient procedure for maintaining and expanding it. The knowledge base will make it simpler for practitioners to access, retrieve, and synthesize evidence so that they can reach a rigorous and accurate assessment of causal relationships between a given drug and HOI. Development of the knowledge base will proceed with the measureable goal of supporting an efficient and thorough evidence-based assessment of the effects of 1,000 active ingredients across 100 HOIs. This non-trivial task will result in a high-quality and generally applicable drug safety knowledge base. It will also yield a reference standard of drug–HOI pairs that will enable more advanced methodological research that empirically evaluates the performance of drug safety analysis methods. Springer International Publishing 2014-07-02 2014 /pmc/articles/PMC4134480/ /pubmed/24985530 http://dx.doi.org/10.1007/s40264-014-0189-0 Text en © The Author(s) 2014 https://creativecommons.org/licenses/by-nc/4.0/ Open AccessThis article is distributed under the terms of the Creative Commons Attribution Noncommercial License which permits any noncommercial use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Current Opinion
Boyce, Richard D.
Ryan, Patrick B.
Norén, G. Niklas
Schuemie, Martijn J.
Reich, Christian
Duke, Jon
Tatonetti, Nicholas P.
Trifirò, Gianluca
Harpaz, Rave
Overhage, J. Marc
Hartzema, Abraham G.
Khayter, Mark
Voss, Erica A.
Lambert, Christophe G.
Huser, Vojtech
Dumontier, Michel
Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest
title Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest
title_full Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest
title_fullStr Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest
title_full_unstemmed Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest
title_short Bridging Islands of Information to Establish an Integrated Knowledge Base of Drugs and Health Outcomes of Interest
title_sort bridging islands of information to establish an integrated knowledge base of drugs and health outcomes of interest
topic Current Opinion
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4134480/
https://www.ncbi.nlm.nih.gov/pubmed/24985530
http://dx.doi.org/10.1007/s40264-014-0189-0
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