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Solubility and Aggregation of Gly(5) in Water

[Image: see text] Experimentally, the solubility of oligoglycines in water decreases as its length increases. Computationally, the free energy of solvation becomes more favorable with chain length for short (n = 1–5) oligoglycines. We present results of large scale simulations with over 600 pentagly...

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Autores principales: Karandur, Deepti, Wong, Ka-Yiu, Pettitt, B. Montgomery
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2014
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136715/
https://www.ncbi.nlm.nih.gov/pubmed/25019618
http://dx.doi.org/10.1021/jp503358n
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author Karandur, Deepti
Wong, Ka-Yiu
Pettitt, B. Montgomery
author_facet Karandur, Deepti
Wong, Ka-Yiu
Pettitt, B. Montgomery
author_sort Karandur, Deepti
collection PubMed
description [Image: see text] Experimentally, the solubility of oligoglycines in water decreases as its length increases. Computationally, the free energy of solvation becomes more favorable with chain length for short (n = 1–5) oligoglycines. We present results of large scale simulations with over 600 pentaglycines at varying concentrations in explicit solvent to consider the mechanism of aggregation. The solubility limit of Gly(5) for the force field used was calculated and compared with experimental values. We find that intermolecular interactions between pentaglycines are favored over interactions between glycine and water, leading to their aggregation. However, the interaction driving peptide associations, liquid–liquid phase separation, are not predominantly hydrogen bonding. Instead, non-hydrogen bonding interactions between partially charged atoms on the peptide backbone allow the formation of dipole–dipole and charge layering correlations that mechanistically stabilize the formation of large, stable peptide clusters.
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spelling pubmed-41367152015-07-14 Solubility and Aggregation of Gly(5) in Water Karandur, Deepti Wong, Ka-Yiu Pettitt, B. Montgomery J Phys Chem B [Image: see text] Experimentally, the solubility of oligoglycines in water decreases as its length increases. Computationally, the free energy of solvation becomes more favorable with chain length for short (n = 1–5) oligoglycines. We present results of large scale simulations with over 600 pentaglycines at varying concentrations in explicit solvent to consider the mechanism of aggregation. The solubility limit of Gly(5) for the force field used was calculated and compared with experimental values. We find that intermolecular interactions between pentaglycines are favored over interactions between glycine and water, leading to their aggregation. However, the interaction driving peptide associations, liquid–liquid phase separation, are not predominantly hydrogen bonding. Instead, non-hydrogen bonding interactions between partially charged atoms on the peptide backbone allow the formation of dipole–dipole and charge layering correlations that mechanistically stabilize the formation of large, stable peptide clusters. American Chemical Society 2014-07-14 2014-08-14 /pmc/articles/PMC4136715/ /pubmed/25019618 http://dx.doi.org/10.1021/jp503358n Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html)
spellingShingle Karandur, Deepti
Wong, Ka-Yiu
Pettitt, B. Montgomery
Solubility and Aggregation of Gly(5) in Water
title Solubility and Aggregation of Gly(5) in Water
title_full Solubility and Aggregation of Gly(5) in Water
title_fullStr Solubility and Aggregation of Gly(5) in Water
title_full_unstemmed Solubility and Aggregation of Gly(5) in Water
title_short Solubility and Aggregation of Gly(5) in Water
title_sort solubility and aggregation of gly(5) in water
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136715/
https://www.ncbi.nlm.nih.gov/pubmed/25019618
http://dx.doi.org/10.1021/jp503358n
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