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Solubility and Aggregation of Gly(5) in Water
[Image: see text] Experimentally, the solubility of oligoglycines in water decreases as its length increases. Computationally, the free energy of solvation becomes more favorable with chain length for short (n = 1–5) oligoglycines. We present results of large scale simulations with over 600 pentagly...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136715/ https://www.ncbi.nlm.nih.gov/pubmed/25019618 http://dx.doi.org/10.1021/jp503358n |
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author | Karandur, Deepti Wong, Ka-Yiu Pettitt, B. Montgomery |
author_facet | Karandur, Deepti Wong, Ka-Yiu Pettitt, B. Montgomery |
author_sort | Karandur, Deepti |
collection | PubMed |
description | [Image: see text] Experimentally, the solubility of oligoglycines in water decreases as its length increases. Computationally, the free energy of solvation becomes more favorable with chain length for short (n = 1–5) oligoglycines. We present results of large scale simulations with over 600 pentaglycines at varying concentrations in explicit solvent to consider the mechanism of aggregation. The solubility limit of Gly(5) for the force field used was calculated and compared with experimental values. We find that intermolecular interactions between pentaglycines are favored over interactions between glycine and water, leading to their aggregation. However, the interaction driving peptide associations, liquid–liquid phase separation, are not predominantly hydrogen bonding. Instead, non-hydrogen bonding interactions between partially charged atoms on the peptide backbone allow the formation of dipole–dipole and charge layering correlations that mechanistically stabilize the formation of large, stable peptide clusters. |
format | Online Article Text |
id | pubmed-4136715 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-41367152015-07-14 Solubility and Aggregation of Gly(5) in Water Karandur, Deepti Wong, Ka-Yiu Pettitt, B. Montgomery J Phys Chem B [Image: see text] Experimentally, the solubility of oligoglycines in water decreases as its length increases. Computationally, the free energy of solvation becomes more favorable with chain length for short (n = 1–5) oligoglycines. We present results of large scale simulations with over 600 pentaglycines at varying concentrations in explicit solvent to consider the mechanism of aggregation. The solubility limit of Gly(5) for the force field used was calculated and compared with experimental values. We find that intermolecular interactions between pentaglycines are favored over interactions between glycine and water, leading to their aggregation. However, the interaction driving peptide associations, liquid–liquid phase separation, are not predominantly hydrogen bonding. Instead, non-hydrogen bonding interactions between partially charged atoms on the peptide backbone allow the formation of dipole–dipole and charge layering correlations that mechanistically stabilize the formation of large, stable peptide clusters. American Chemical Society 2014-07-14 2014-08-14 /pmc/articles/PMC4136715/ /pubmed/25019618 http://dx.doi.org/10.1021/jp503358n Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) |
spellingShingle | Karandur, Deepti Wong, Ka-Yiu Pettitt, B. Montgomery Solubility and Aggregation of Gly(5) in Water |
title | Solubility
and Aggregation of Gly(5) in Water |
title_full | Solubility
and Aggregation of Gly(5) in Water |
title_fullStr | Solubility
and Aggregation of Gly(5) in Water |
title_full_unstemmed | Solubility
and Aggregation of Gly(5) in Water |
title_short | Solubility
and Aggregation of Gly(5) in Water |
title_sort | solubility
and aggregation of gly(5) in water |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4136715/ https://www.ncbi.nlm.nih.gov/pubmed/25019618 http://dx.doi.org/10.1021/jp503358n |
work_keys_str_mv | AT karandurdeepti solubilityandaggregationofgly5inwater AT wongkayiu solubilityandaggregationofgly5inwater AT pettittbmontgomery solubilityandaggregationofgly5inwater |