Cargando…
Predicting Progression of Alzheimer’s Disease Using Ordinal Regression
We propose a novel approach to predicting disease progression in Alzheimer’s disease (AD) – multivariate ordinal regression – which inherently models the ordered nature of brain atrophy spanning normal aging (CTL) to mild cognitive impairment (MCI) to AD. Ordinal regression provides probabilistic cl...
Autores principales: | , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4139338/ https://www.ncbi.nlm.nih.gov/pubmed/25141298 http://dx.doi.org/10.1371/journal.pone.0105542 |
_version_ | 1782331349485486080 |
---|---|
author | Doyle, Orla M. Westman, Eric Marquand, Andre F. Mecocci, Patrizia Vellas, Bruno Tsolaki, Magda Kłoszewska, Iwona Soininen, Hilkka Lovestone, Simon Williams, Steve C. R. Simmons, Andrew |
author_facet | Doyle, Orla M. Westman, Eric Marquand, Andre F. Mecocci, Patrizia Vellas, Bruno Tsolaki, Magda Kłoszewska, Iwona Soininen, Hilkka Lovestone, Simon Williams, Steve C. R. Simmons, Andrew |
author_sort | Doyle, Orla M. |
collection | PubMed |
description | We propose a novel approach to predicting disease progression in Alzheimer’s disease (AD) – multivariate ordinal regression – which inherently models the ordered nature of brain atrophy spanning normal aging (CTL) to mild cognitive impairment (MCI) to AD. Ordinal regression provides probabilistic class predictions as well as a continuous index of disease progression – the ORCHID (Ordinal Regression Characteristic Index of Dementia) score. We applied ordinal regression to 1023 baseline structural MRI scans from two studies: the US-based Alzheimer’s Disease Neuroimaging Initiative (ADNI) and the European based AddNeuroMed program. Here, the acquired AddNeuroMed dataset was used as a completely independent test set for the ordinal regression model trained on the ADNI cohort providing an optimal assessment of model generalizability. Distinguishing CTL-like (CTL and stable MCI) from AD-like (MCI converters and AD) resulted in balanced accuracies of 82% (cross-validation) for ADNI and 79% (independent test set) for AddNeuroMed. For prediction of conversion from MCI to AD, balanced accuracies of 70% (AUC of 0.75) and 75% (AUC of 0.81) were achieved. The ORCHID score was computed for all subjects. We showed that this measure significantly correlated with MMSE at 12 months (ρ = –0.64, ADNI and ρ = –0.59, AddNeuroMed). Additionally, the ORCHID score can help fractionate subjects with unstable diagnoses (e.g. reverters and healthy controls who later progressed to MCI), moderately late converters (12–24 months) and late converters (24–36 months). A comparison with results in the literature and direct comparison with a binary classifier suggests that the performance of this framework is highly competitive. |
format | Online Article Text |
id | pubmed-4139338 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-41393382014-08-25 Predicting Progression of Alzheimer’s Disease Using Ordinal Regression Doyle, Orla M. Westman, Eric Marquand, Andre F. Mecocci, Patrizia Vellas, Bruno Tsolaki, Magda Kłoszewska, Iwona Soininen, Hilkka Lovestone, Simon Williams, Steve C. R. Simmons, Andrew PLoS One Research Article We propose a novel approach to predicting disease progression in Alzheimer’s disease (AD) – multivariate ordinal regression – which inherently models the ordered nature of brain atrophy spanning normal aging (CTL) to mild cognitive impairment (MCI) to AD. Ordinal regression provides probabilistic class predictions as well as a continuous index of disease progression – the ORCHID (Ordinal Regression Characteristic Index of Dementia) score. We applied ordinal regression to 1023 baseline structural MRI scans from two studies: the US-based Alzheimer’s Disease Neuroimaging Initiative (ADNI) and the European based AddNeuroMed program. Here, the acquired AddNeuroMed dataset was used as a completely independent test set for the ordinal regression model trained on the ADNI cohort providing an optimal assessment of model generalizability. Distinguishing CTL-like (CTL and stable MCI) from AD-like (MCI converters and AD) resulted in balanced accuracies of 82% (cross-validation) for ADNI and 79% (independent test set) for AddNeuroMed. For prediction of conversion from MCI to AD, balanced accuracies of 70% (AUC of 0.75) and 75% (AUC of 0.81) were achieved. The ORCHID score was computed for all subjects. We showed that this measure significantly correlated with MMSE at 12 months (ρ = –0.64, ADNI and ρ = –0.59, AddNeuroMed). Additionally, the ORCHID score can help fractionate subjects with unstable diagnoses (e.g. reverters and healthy controls who later progressed to MCI), moderately late converters (12–24 months) and late converters (24–36 months). A comparison with results in the literature and direct comparison with a binary classifier suggests that the performance of this framework is highly competitive. Public Library of Science 2014-08-20 /pmc/articles/PMC4139338/ /pubmed/25141298 http://dx.doi.org/10.1371/journal.pone.0105542 Text en © 2014 Doyle et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Doyle, Orla M. Westman, Eric Marquand, Andre F. Mecocci, Patrizia Vellas, Bruno Tsolaki, Magda Kłoszewska, Iwona Soininen, Hilkka Lovestone, Simon Williams, Steve C. R. Simmons, Andrew Predicting Progression of Alzheimer’s Disease Using Ordinal Regression |
title | Predicting Progression of Alzheimer’s Disease Using Ordinal Regression |
title_full | Predicting Progression of Alzheimer’s Disease Using Ordinal Regression |
title_fullStr | Predicting Progression of Alzheimer’s Disease Using Ordinal Regression |
title_full_unstemmed | Predicting Progression of Alzheimer’s Disease Using Ordinal Regression |
title_short | Predicting Progression of Alzheimer’s Disease Using Ordinal Regression |
title_sort | predicting progression of alzheimer’s disease using ordinal regression |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4139338/ https://www.ncbi.nlm.nih.gov/pubmed/25141298 http://dx.doi.org/10.1371/journal.pone.0105542 |
work_keys_str_mv | AT doyleorlam predictingprogressionofalzheimersdiseaseusingordinalregression AT westmaneric predictingprogressionofalzheimersdiseaseusingordinalregression AT marquandandref predictingprogressionofalzheimersdiseaseusingordinalregression AT mecoccipatrizia predictingprogressionofalzheimersdiseaseusingordinalregression AT vellasbruno predictingprogressionofalzheimersdiseaseusingordinalregression AT tsolakimagda predictingprogressionofalzheimersdiseaseusingordinalregression AT kłoszewskaiwona predictingprogressionofalzheimersdiseaseusingordinalregression AT soininenhilkka predictingprogressionofalzheimersdiseaseusingordinalregression AT lovestonesimon predictingprogressionofalzheimersdiseaseusingordinalregression AT williamsstevecr predictingprogressionofalzheimersdiseaseusingordinalregression AT simmonsandrew predictingprogressionofalzheimersdiseaseusingordinalregression |