Cargando…

Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells

BACKGROUND: Neuroblastoma Tumor (NT) is one of the most aggressive types of infant cancer. Essential to accurate diagnosis and prognosis is cellular quantitative analysis of the tumor. Counting enormous numbers of cells under an optical microscope is error-prone. There is therefore an urgent demand...

Descripción completa

Detalles Bibliográficos
Autores principales: Tafavogh, Siamak, Catchpoole, Daniel R, Kennedy, Paul J
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4139617/
https://www.ncbi.nlm.nih.gov/pubmed/25109603
http://dx.doi.org/10.1186/1471-2105-15-272
_version_ 1782331380279017472
author Tafavogh, Siamak
Catchpoole, Daniel R
Kennedy, Paul J
author_facet Tafavogh, Siamak
Catchpoole, Daniel R
Kennedy, Paul J
author_sort Tafavogh, Siamak
collection PubMed
description BACKGROUND: Neuroblastoma Tumor (NT) is one of the most aggressive types of infant cancer. Essential to accurate diagnosis and prognosis is cellular quantitative analysis of the tumor. Counting enormous numbers of cells under an optical microscope is error-prone. There is therefore an urgent demand from pathologists for robust and automated cell counting systems. However, the main challenge in developing these systems is the inability of them to distinguish between overlapping cells and single cells, and to split the overlapping cells. We address this challenge in two stages by: 1) distinguishing overlapping cells from single cells using the morphological differences between them such as area, uniformity of diameters and cell concavity; and 2) splitting overlapping cells into single cells. We propose a novel approach by using the dominant concave regions of cells as markers to identify the overlap region. We then find the initial splitting points at the critical points of the concave regions by decomposing the concave regions into their components such as arcs, chords and edges, and the distance between the components is analyzed using the developed seed growing technique. Lastly, a shortest path determination approach is developed to determine the optimum splitting route between two candidate initial splitting points. RESULTS: We compare the cell counting results of our system with those of a pathologist as the ground-truth. We also compare the system with three state-of-the-art methods, and the results of statistical tests show a significant improvement in the performance of our system compared to state-of-the-art methods. The F-measure obtained by our system is 88.70%. To evaluate the generalizability of our algorithm, we apply it to images of follicular lymphoma, which has similar histological regions to NT. Of the algorithms tested, our algorithm obtains the highest F-measure of 92.79%. CONCLUSION: We develop a novel overlapping cell splitting algorithm to enhance the cellular quantitative analysis of infant neuroblastoma. The performance of the proposed algorithm promises a reliable automated cell counting system for pathology laboratories. Moreover, the high performance obtained by our algorithm for images of follicular lymphoma demonstrates the generalization of the proposed algorithm for cancers with similar histological regions and histological structures.
format Online
Article
Text
id pubmed-4139617
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-41396172014-08-22 Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells Tafavogh, Siamak Catchpoole, Daniel R Kennedy, Paul J BMC Bioinformatics Research Article BACKGROUND: Neuroblastoma Tumor (NT) is one of the most aggressive types of infant cancer. Essential to accurate diagnosis and prognosis is cellular quantitative analysis of the tumor. Counting enormous numbers of cells under an optical microscope is error-prone. There is therefore an urgent demand from pathologists for robust and automated cell counting systems. However, the main challenge in developing these systems is the inability of them to distinguish between overlapping cells and single cells, and to split the overlapping cells. We address this challenge in two stages by: 1) distinguishing overlapping cells from single cells using the morphological differences between them such as area, uniformity of diameters and cell concavity; and 2) splitting overlapping cells into single cells. We propose a novel approach by using the dominant concave regions of cells as markers to identify the overlap region. We then find the initial splitting points at the critical points of the concave regions by decomposing the concave regions into their components such as arcs, chords and edges, and the distance between the components is analyzed using the developed seed growing technique. Lastly, a shortest path determination approach is developed to determine the optimum splitting route between two candidate initial splitting points. RESULTS: We compare the cell counting results of our system with those of a pathologist as the ground-truth. We also compare the system with three state-of-the-art methods, and the results of statistical tests show a significant improvement in the performance of our system compared to state-of-the-art methods. The F-measure obtained by our system is 88.70%. To evaluate the generalizability of our algorithm, we apply it to images of follicular lymphoma, which has similar histological regions to NT. Of the algorithms tested, our algorithm obtains the highest F-measure of 92.79%. CONCLUSION: We develop a novel overlapping cell splitting algorithm to enhance the cellular quantitative analysis of infant neuroblastoma. The performance of the proposed algorithm promises a reliable automated cell counting system for pathology laboratories. Moreover, the high performance obtained by our algorithm for images of follicular lymphoma demonstrates the generalization of the proposed algorithm for cancers with similar histological regions and histological structures. BioMed Central 2014-08-11 /pmc/articles/PMC4139617/ /pubmed/25109603 http://dx.doi.org/10.1186/1471-2105-15-272 Text en © Tafavogh et al.; licensee BioMed Central Ltd. 2014 This article is published under license to BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Tafavogh, Siamak
Catchpoole, Daniel R
Kennedy, Paul J
Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells
title Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells
title_full Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells
title_fullStr Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells
title_full_unstemmed Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells
title_short Cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells
title_sort cellular quantitative analysis of neuroblastoma tumor and splitting overlapping cells
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4139617/
https://www.ncbi.nlm.nih.gov/pubmed/25109603
http://dx.doi.org/10.1186/1471-2105-15-272
work_keys_str_mv AT tafavoghsiamak cellularquantitativeanalysisofneuroblastomatumorandsplittingoverlappingcells
AT catchpooledanielr cellularquantitativeanalysisofneuroblastomatumorandsplittingoverlappingcells
AT kennedypaulj cellularquantitativeanalysisofneuroblastomatumorandsplittingoverlappingcells