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A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1)
• Premise of the study: I present a protocol for creating geometric leaf shape metrics to facilitate widespread application of geometric morphometric methods to leaf shape measurement. • Methods and Results: To quantify circularity, I created a novel shape metric in the form of the vector between a...
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Botanical Society of America
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4141713/ https://www.ncbi.nlm.nih.gov/pubmed/25202647 http://dx.doi.org/10.3732/apps.1400009 |
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author | Krieger, Jonathan D. |
author_facet | Krieger, Jonathan D. |
author_sort | Krieger, Jonathan D. |
collection | PubMed |
description | • Premise of the study: I present a protocol for creating geometric leaf shape metrics to facilitate widespread application of geometric morphometric methods to leaf shape measurement. • Methods and Results: To quantify circularity, I created a novel shape metric in the form of the vector between a circle and a line, termed geometric circularity. Using leaves from 17 fern taxa, I performed a coordinate-point eigenshape analysis to empirically identify patterns of shape covariation. I then compared the geometric circularity metric to the empirically derived shape space and the standard metric, circularity shape factor. • Conclusions: The geometric circularity metric was consistent with empirical patterns of shape covariation and appeared more biologically meaningful than the standard approach, the circularity shape factor. The protocol described here has the potential to make geometric morphometrics more accessible to plant biologists by generalizing the approach to developing synthetic shape metrics based on classic, qualitative shape descriptors. |
format | Online Article Text |
id | pubmed-4141713 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41417132014-09-08 A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1) Krieger, Jonathan D. Appl Plant Sci Protocol Note • Premise of the study: I present a protocol for creating geometric leaf shape metrics to facilitate widespread application of geometric morphometric methods to leaf shape measurement. • Methods and Results: To quantify circularity, I created a novel shape metric in the form of the vector between a circle and a line, termed geometric circularity. Using leaves from 17 fern taxa, I performed a coordinate-point eigenshape analysis to empirically identify patterns of shape covariation. I then compared the geometric circularity metric to the empirically derived shape space and the standard metric, circularity shape factor. • Conclusions: The geometric circularity metric was consistent with empirical patterns of shape covariation and appeared more biologically meaningful than the standard approach, the circularity shape factor. The protocol described here has the potential to make geometric morphometrics more accessible to plant biologists by generalizing the approach to developing synthetic shape metrics based on classic, qualitative shape descriptors. Botanical Society of America 2014-08-12 /pmc/articles/PMC4141713/ /pubmed/25202647 http://dx.doi.org/10.3732/apps.1400009 Text en © 2014 Krieger. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Protocol Note Krieger, Jonathan D. A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1) |
title | A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1) |
title_full | A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1) |
title_fullStr | A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1) |
title_full_unstemmed | A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1) |
title_short | A protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1) |
title_sort | protocol for the creation of useful geometric shape metrics illustrated with a newly derived geometric measure of leaf circularity(1) |
topic | Protocol Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4141713/ https://www.ncbi.nlm.nih.gov/pubmed/25202647 http://dx.doi.org/10.3732/apps.1400009 |
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