Cargando…

Separating morphologically similar pollen types using basic shape features from digital images: A preliminary study(1)

• Premise of the study: One of the many advantages offered by automated palynology systems is the ability to vastly increase the number of observations made on a particular sample or samples. This is of particular benefit when attempting to fully quantify the degree of variation within or between cl...

Descripción completa

Detalles Bibliográficos
Autores principales: Holt, Katherine A., Bebbington, Mark S.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4141716/
https://www.ncbi.nlm.nih.gov/pubmed/25202650
http://dx.doi.org/10.3732/apps.1400032
_version_ 1782331677201137664
author Holt, Katherine A.
Bebbington, Mark S.
author_facet Holt, Katherine A.
Bebbington, Mark S.
author_sort Holt, Katherine A.
collection PubMed
description • Premise of the study: One of the many advantages offered by automated palynology systems is the ability to vastly increase the number of observations made on a particular sample or samples. This is of particular benefit when attempting to fully quantify the degree of variation within or between closely related pollen types. • Methods: An automated palynology system (Classifynder) has been used to further investigate the variation in pollen morphology between two New Zealand species of Myrtaceae (Leptospermum scoparium and Kunzea ericoides) that are of significance in the New Zealand honey industry. Seven geometric features extracted from automatically gathered digital images were used to characterize the range of shape and size of the two taxa, and to examine the extent of previously reported overlap in these variables. • Results: Our results indicate a degree of overlap in all cases. The narrowest overlap was in measurements of maximum Feret diameter (MFD) in grains oriented in polar view. Multivariate statistical analysis using all seven factors provided the most robust discrimination between the two types. • Discussion: Further work is required before this approach could be routinely applied to separating the two pollen types used in this study, most notably the development of comprehensive reference distributions for the types in question.
format Online
Article
Text
id pubmed-4141716
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Botanical Society of America
record_format MEDLINE/PubMed
spelling pubmed-41417162014-09-08 Separating morphologically similar pollen types using basic shape features from digital images: A preliminary study(1) Holt, Katherine A. Bebbington, Mark S. Appl Plant Sci Application Article • Premise of the study: One of the many advantages offered by automated palynology systems is the ability to vastly increase the number of observations made on a particular sample or samples. This is of particular benefit when attempting to fully quantify the degree of variation within or between closely related pollen types. • Methods: An automated palynology system (Classifynder) has been used to further investigate the variation in pollen morphology between two New Zealand species of Myrtaceae (Leptospermum scoparium and Kunzea ericoides) that are of significance in the New Zealand honey industry. Seven geometric features extracted from automatically gathered digital images were used to characterize the range of shape and size of the two taxa, and to examine the extent of previously reported overlap in these variables. • Results: Our results indicate a degree of overlap in all cases. The narrowest overlap was in measurements of maximum Feret diameter (MFD) in grains oriented in polar view. Multivariate statistical analysis using all seven factors provided the most robust discrimination between the two types. • Discussion: Further work is required before this approach could be routinely applied to separating the two pollen types used in this study, most notably the development of comprehensive reference distributions for the types in question. Botanical Society of America 2014-08-18 /pmc/articles/PMC4141716/ /pubmed/25202650 http://dx.doi.org/10.3732/apps.1400032 Text en © 2014 Holt and Bebbington. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Application Article
Holt, Katherine A.
Bebbington, Mark S.
Separating morphologically similar pollen types using basic shape features from digital images: A preliminary study(1)
title Separating morphologically similar pollen types using basic shape features from digital images: A preliminary study(1)
title_full Separating morphologically similar pollen types using basic shape features from digital images: A preliminary study(1)
title_fullStr Separating morphologically similar pollen types using basic shape features from digital images: A preliminary study(1)
title_full_unstemmed Separating morphologically similar pollen types using basic shape features from digital images: A preliminary study(1)
title_short Separating morphologically similar pollen types using basic shape features from digital images: A preliminary study(1)
title_sort separating morphologically similar pollen types using basic shape features from digital images: a preliminary study(1)
topic Application Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4141716/
https://www.ncbi.nlm.nih.gov/pubmed/25202650
http://dx.doi.org/10.3732/apps.1400032
work_keys_str_mv AT holtkatherinea separatingmorphologicallysimilarpollentypesusingbasicshapefeaturesfromdigitalimagesapreliminarystudy1
AT bebbingtonmarks separatingmorphologicallysimilarpollentypesusingbasicshapefeaturesfromdigitalimagesapreliminarystudy1