Cargando…

Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)

OBJECTIVE: To (1) evaluate the GoodOD guideline for ontology development by applying the OQuaRE evaluation method and metrics to the ontology artefacts that were produced by students in a randomized controlled trial, and (2) informally compare the OQuaRE evaluation method with gold standard and comp...

Descripción completa

Detalles Bibliográficos
Autores principales: Duque-Ramos, Astrid, Boeker, Martin, Jansen, Ludger, Schulz, Stefan, Iniesta, Miguela, Fernández-Breis, Jesualdo Tomás
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4141745/
https://www.ncbi.nlm.nih.gov/pubmed/25148262
http://dx.doi.org/10.1371/journal.pone.0104463
_version_ 1782331683614228480
author Duque-Ramos, Astrid
Boeker, Martin
Jansen, Ludger
Schulz, Stefan
Iniesta, Miguela
Fernández-Breis, Jesualdo Tomás
author_facet Duque-Ramos, Astrid
Boeker, Martin
Jansen, Ludger
Schulz, Stefan
Iniesta, Miguela
Fernández-Breis, Jesualdo Tomás
author_sort Duque-Ramos, Astrid
collection PubMed
description OBJECTIVE: To (1) evaluate the GoodOD guideline for ontology development by applying the OQuaRE evaluation method and metrics to the ontology artefacts that were produced by students in a randomized controlled trial, and (2) informally compare the OQuaRE evaluation method with gold standard and competency questions based evaluation methods, respectively. BACKGROUND: In the last decades many methods for ontology construction and ontology evaluation have been proposed. However, none of them has become a standard and there is no empirical evidence of comparative evaluation of such methods. This paper brings together GoodOD and OQuaRE. GoodOD is a guideline for developing robust ontologies. It was previously evaluated in a randomized controlled trial employing metrics based on gold standard ontologies and competency questions as outcome parameters. OQuaRE is a method for ontology quality evaluation which adapts the SQuaRE standard for software product quality to ontologies and has been successfully used for evaluating the quality of ontologies. METHODS: In this paper, we evaluate the effect of training in ontology construction based on the GoodOD guideline within the OQuaRE quality evaluation framework and compare the results with those obtained for the previous studies based on the same data. RESULTS: Our results show a significant effect of the GoodOD training over developed ontologies by topics: (a) a highly significant effect was detected in three topics from the analysis of the ontologies of untrained and trained students; (b) both positive and negative training effects with respect to the gold standard were found for five topics. CONCLUSION: The GoodOD guideline had a significant effect over the quality of the ontologies developed. Our results show that GoodOD ontologies can be effectively evaluated using OQuaRE and that OQuaRE is able to provide additional useful information about the quality of the GoodOD ontologies.
format Online
Article
Text
id pubmed-4141745
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-41417452014-08-25 Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE) Duque-Ramos, Astrid Boeker, Martin Jansen, Ludger Schulz, Stefan Iniesta, Miguela Fernández-Breis, Jesualdo Tomás PLoS One Research Article OBJECTIVE: To (1) evaluate the GoodOD guideline for ontology development by applying the OQuaRE evaluation method and metrics to the ontology artefacts that were produced by students in a randomized controlled trial, and (2) informally compare the OQuaRE evaluation method with gold standard and competency questions based evaluation methods, respectively. BACKGROUND: In the last decades many methods for ontology construction and ontology evaluation have been proposed. However, none of them has become a standard and there is no empirical evidence of comparative evaluation of such methods. This paper brings together GoodOD and OQuaRE. GoodOD is a guideline for developing robust ontologies. It was previously evaluated in a randomized controlled trial employing metrics based on gold standard ontologies and competency questions as outcome parameters. OQuaRE is a method for ontology quality evaluation which adapts the SQuaRE standard for software product quality to ontologies and has been successfully used for evaluating the quality of ontologies. METHODS: In this paper, we evaluate the effect of training in ontology construction based on the GoodOD guideline within the OQuaRE quality evaluation framework and compare the results with those obtained for the previous studies based on the same data. RESULTS: Our results show a significant effect of the GoodOD training over developed ontologies by topics: (a) a highly significant effect was detected in three topics from the analysis of the ontologies of untrained and trained students; (b) both positive and negative training effects with respect to the gold standard were found for five topics. CONCLUSION: The GoodOD guideline had a significant effect over the quality of the ontologies developed. Our results show that GoodOD ontologies can be effectively evaluated using OQuaRE and that OQuaRE is able to provide additional useful information about the quality of the GoodOD ontologies. Public Library of Science 2014-08-22 /pmc/articles/PMC4141745/ /pubmed/25148262 http://dx.doi.org/10.1371/journal.pone.0104463 Text en © 2014 Duque-Ramos et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Duque-Ramos, Astrid
Boeker, Martin
Jansen, Ludger
Schulz, Stefan
Iniesta, Miguela
Fernández-Breis, Jesualdo Tomás
Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)
title Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)
title_full Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)
title_fullStr Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)
title_full_unstemmed Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)
title_short Evaluating the Good Ontology Design Guideline (GoodOD) with the Ontology Quality Requirements and Evaluation Method and Metrics (OQuaRE)
title_sort evaluating the good ontology design guideline (goodod) with the ontology quality requirements and evaluation method and metrics (oquare)
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4141745/
https://www.ncbi.nlm.nih.gov/pubmed/25148262
http://dx.doi.org/10.1371/journal.pone.0104463
work_keys_str_mv AT duqueramosastrid evaluatingthegoodontologydesignguidelinegoododwiththeontologyqualityrequirementsandevaluationmethodandmetricsoquare
AT boekermartin evaluatingthegoodontologydesignguidelinegoododwiththeontologyqualityrequirementsandevaluationmethodandmetricsoquare
AT jansenludger evaluatingthegoodontologydesignguidelinegoododwiththeontologyqualityrequirementsandevaluationmethodandmetricsoquare
AT schulzstefan evaluatingthegoodontologydesignguidelinegoododwiththeontologyqualityrequirementsandevaluationmethodandmetricsoquare
AT iniestamiguela evaluatingthegoodontologydesignguidelinegoododwiththeontologyqualityrequirementsandevaluationmethodandmetricsoquare
AT fernandezbreisjesualdotomas evaluatingthegoodontologydesignguidelinegoododwiththeontologyqualityrequirementsandevaluationmethodandmetricsoquare