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Family-based association test using normal approximation to gene dropping null distribution
We derive the analytical mean and variance of the score test statistic in gene-dropping simulations and approximate the null distribution of the test statistic by a normal distribution. We provide insights into the gene-dropping test by decomposing the test statistic into two components: the first c...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143692/ https://www.ncbi.nlm.nih.gov/pubmed/25519313 http://dx.doi.org/10.1186/1753-6561-8-S1-S18 |
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author | Jiang, Yuan Emerson, Sarah Wang, Lu Li, Lujing Di, Yanming |
author_facet | Jiang, Yuan Emerson, Sarah Wang, Lu Li, Lujing Di, Yanming |
author_sort | Jiang, Yuan |
collection | PubMed |
description | We derive the analytical mean and variance of the score test statistic in gene-dropping simulations and approximate the null distribution of the test statistic by a normal distribution. We provide insights into the gene-dropping test by decomposing the test statistic into two components: the first component provides information about linkage, and the second component provides information about fine mapping under the linkage peak. We demonstrate our theoretical findings by applying the gene-dropping test to the simulated data set from Genetic Analysis Workshop 18 and comparing its performance with existing population and family-based association tests. |
format | Online Article Text |
id | pubmed-4143692 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-41436922014-09-02 Family-based association test using normal approximation to gene dropping null distribution Jiang, Yuan Emerson, Sarah Wang, Lu Li, Lujing Di, Yanming BMC Proc Proceedings We derive the analytical mean and variance of the score test statistic in gene-dropping simulations and approximate the null distribution of the test statistic by a normal distribution. We provide insights into the gene-dropping test by decomposing the test statistic into two components: the first component provides information about linkage, and the second component provides information about fine mapping under the linkage peak. We demonstrate our theoretical findings by applying the gene-dropping test to the simulated data set from Genetic Analysis Workshop 18 and comparing its performance with existing population and family-based association tests. BioMed Central 2014-06-17 /pmc/articles/PMC4143692/ /pubmed/25519313 http://dx.doi.org/10.1186/1753-6561-8-S1-S18 Text en Copyright © 2014 Jiang et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Proceedings Jiang, Yuan Emerson, Sarah Wang, Lu Li, Lujing Di, Yanming Family-based association test using normal approximation to gene dropping null distribution |
title | Family-based association test using normal approximation to gene dropping null distribution |
title_full | Family-based association test using normal approximation to gene dropping null distribution |
title_fullStr | Family-based association test using normal approximation to gene dropping null distribution |
title_full_unstemmed | Family-based association test using normal approximation to gene dropping null distribution |
title_short | Family-based association test using normal approximation to gene dropping null distribution |
title_sort | family-based association test using normal approximation to gene dropping null distribution |
topic | Proceedings |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143692/ https://www.ncbi.nlm.nih.gov/pubmed/25519313 http://dx.doi.org/10.1186/1753-6561-8-S1-S18 |
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