Cargando…
Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska
The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and it...
Autores principales: | , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143960/ https://www.ncbi.nlm.nih.gov/pubmed/24893754 http://dx.doi.org/10.1111/1574-6941.12362 |
_version_ | 1782331992654741504 |
---|---|
author | Kim, Hye Min Jung, Ji Young Yergeau, Etienne Hwang, Chung Yeon Hinzman, Larry Nam, Sungjin Hong, Soon Gyu Kim, Ok-Sun Chun, Jongsik Lee, Yoo Kyung |
author_facet | Kim, Hye Min Jung, Ji Young Yergeau, Etienne Hwang, Chung Yeon Hinzman, Larry Nam, Sungjin Hong, Soon Gyu Kim, Ok-Sun Chun, Jongsik Lee, Yoo Kyung |
author_sort | Kim, Hye Min |
collection | PubMed |
description | The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and its relationship with soil properties, we investigated the bacterial community structure and properties of surface soil from the moist acidic tussock tundra in Council, Alaska. We collected 70 soil samples with 25-m intervals between sampling points from 0–10 cm to 10–20 cm depths. The bacterial community was analyzed by pyrosequencing of 16S rRNA genes, and the following soil properties were analyzed: soil moisture content (MC), pH, total carbon (TC), total nitrogen (TN), and inorganic nitrogen ([Image: see text] and [Image: see text]). The community compositions of the two different depths showed that Alphaproteobacteria decreased with soil depth. Among the soil properties measured, soil pH was the most significant factor correlating with bacterial community in both upper and lower-layer soils. Bacterial community similarity based on jackknifed unweighted unifrac distance showed greater similarity across horizontal layers than through the vertical depth. This study showed that soil depth and pH were the most important soil properties determining bacterial community structure of the subarctic tundra soil in Council, Alaska. |
format | Online Article Text |
id | pubmed-4143960 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-41439602014-08-27 Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska Kim, Hye Min Jung, Ji Young Yergeau, Etienne Hwang, Chung Yeon Hinzman, Larry Nam, Sungjin Hong, Soon Gyu Kim, Ok-Sun Chun, Jongsik Lee, Yoo Kyung FEMS Microbiol Ecol Research Articles The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and its relationship with soil properties, we investigated the bacterial community structure and properties of surface soil from the moist acidic tussock tundra in Council, Alaska. We collected 70 soil samples with 25-m intervals between sampling points from 0–10 cm to 10–20 cm depths. The bacterial community was analyzed by pyrosequencing of 16S rRNA genes, and the following soil properties were analyzed: soil moisture content (MC), pH, total carbon (TC), total nitrogen (TN), and inorganic nitrogen ([Image: see text] and [Image: see text]). The community compositions of the two different depths showed that Alphaproteobacteria decreased with soil depth. Among the soil properties measured, soil pH was the most significant factor correlating with bacterial community in both upper and lower-layer soils. Bacterial community similarity based on jackknifed unweighted unifrac distance showed greater similarity across horizontal layers than through the vertical depth. This study showed that soil depth and pH were the most important soil properties determining bacterial community structure of the subarctic tundra soil in Council, Alaska. Blackwell Publishing Ltd 2014-08 2014-08-04 /pmc/articles/PMC4143960/ /pubmed/24893754 http://dx.doi.org/10.1111/1574-6941.12362 Text en Copyright © 2014 Federation of European Microbiological Societies http://creativecommons.org/licenses/by/3.0/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Articles Kim, Hye Min Jung, Ji Young Yergeau, Etienne Hwang, Chung Yeon Hinzman, Larry Nam, Sungjin Hong, Soon Gyu Kim, Ok-Sun Chun, Jongsik Lee, Yoo Kyung Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska |
title | Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska |
title_full | Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska |
title_fullStr | Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska |
title_full_unstemmed | Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska |
title_short | Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska |
title_sort | bacterial community structure and soil properties of a subarctic tundra soil in council, alaska |
topic | Research Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143960/ https://www.ncbi.nlm.nih.gov/pubmed/24893754 http://dx.doi.org/10.1111/1574-6941.12362 |
work_keys_str_mv | AT kimhyemin bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT jungjiyoung bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT yergeauetienne bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT hwangchungyeon bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT hinzmanlarry bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT namsungjin bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT hongsoongyu bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT kimoksun bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT chunjongsik bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska AT leeyookyung bacterialcommunitystructureandsoilpropertiesofasubarctictundrasoilincouncilalaska |