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Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska

The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and it...

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Autores principales: Kim, Hye Min, Jung, Ji Young, Yergeau, Etienne, Hwang, Chung Yeon, Hinzman, Larry, Nam, Sungjin, Hong, Soon Gyu, Kim, Ok-Sun, Chun, Jongsik, Lee, Yoo Kyung
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143960/
https://www.ncbi.nlm.nih.gov/pubmed/24893754
http://dx.doi.org/10.1111/1574-6941.12362
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author Kim, Hye Min
Jung, Ji Young
Yergeau, Etienne
Hwang, Chung Yeon
Hinzman, Larry
Nam, Sungjin
Hong, Soon Gyu
Kim, Ok-Sun
Chun, Jongsik
Lee, Yoo Kyung
author_facet Kim, Hye Min
Jung, Ji Young
Yergeau, Etienne
Hwang, Chung Yeon
Hinzman, Larry
Nam, Sungjin
Hong, Soon Gyu
Kim, Ok-Sun
Chun, Jongsik
Lee, Yoo Kyung
author_sort Kim, Hye Min
collection PubMed
description The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and its relationship with soil properties, we investigated the bacterial community structure and properties of surface soil from the moist acidic tussock tundra in Council, Alaska. We collected 70 soil samples with 25-m intervals between sampling points from 0–10 cm to 10–20 cm depths. The bacterial community was analyzed by pyrosequencing of 16S rRNA genes, and the following soil properties were analyzed: soil moisture content (MC), pH, total carbon (TC), total nitrogen (TN), and inorganic nitrogen ([Image: see text] and [Image: see text]). The community compositions of the two different depths showed that Alphaproteobacteria decreased with soil depth. Among the soil properties measured, soil pH was the most significant factor correlating with bacterial community in both upper and lower-layer soils. Bacterial community similarity based on jackknifed unweighted unifrac distance showed greater similarity across horizontal layers than through the vertical depth. This study showed that soil depth and pH were the most important soil properties determining bacterial community structure of the subarctic tundra soil in Council, Alaska.
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spelling pubmed-41439602014-08-27 Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska Kim, Hye Min Jung, Ji Young Yergeau, Etienne Hwang, Chung Yeon Hinzman, Larry Nam, Sungjin Hong, Soon Gyu Kim, Ok-Sun Chun, Jongsik Lee, Yoo Kyung FEMS Microbiol Ecol Research Articles The subarctic region is highly responsive and vulnerable to climate change. Understanding the structure of subarctic soil microbial communities is essential for predicting the response of the subarctic soil environment to climate change. To determine the composition of the bacterial community and its relationship with soil properties, we investigated the bacterial community structure and properties of surface soil from the moist acidic tussock tundra in Council, Alaska. We collected 70 soil samples with 25-m intervals between sampling points from 0–10 cm to 10–20 cm depths. The bacterial community was analyzed by pyrosequencing of 16S rRNA genes, and the following soil properties were analyzed: soil moisture content (MC), pH, total carbon (TC), total nitrogen (TN), and inorganic nitrogen ([Image: see text] and [Image: see text]). The community compositions of the two different depths showed that Alphaproteobacteria decreased with soil depth. Among the soil properties measured, soil pH was the most significant factor correlating with bacterial community in both upper and lower-layer soils. Bacterial community similarity based on jackknifed unweighted unifrac distance showed greater similarity across horizontal layers than through the vertical depth. This study showed that soil depth and pH were the most important soil properties determining bacterial community structure of the subarctic tundra soil in Council, Alaska. Blackwell Publishing Ltd 2014-08 2014-08-04 /pmc/articles/PMC4143960/ /pubmed/24893754 http://dx.doi.org/10.1111/1574-6941.12362 Text en Copyright © 2014 Federation of European Microbiological Societies http://creativecommons.org/licenses/by/3.0/ This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Articles
Kim, Hye Min
Jung, Ji Young
Yergeau, Etienne
Hwang, Chung Yeon
Hinzman, Larry
Nam, Sungjin
Hong, Soon Gyu
Kim, Ok-Sun
Chun, Jongsik
Lee, Yoo Kyung
Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska
title Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska
title_full Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska
title_fullStr Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska
title_full_unstemmed Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska
title_short Bacterial community structure and soil properties of a subarctic tundra soil in Council, Alaska
title_sort bacterial community structure and soil properties of a subarctic tundra soil in council, alaska
topic Research Articles
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143960/
https://www.ncbi.nlm.nih.gov/pubmed/24893754
http://dx.doi.org/10.1111/1574-6941.12362
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