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Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing

Contemporary biomedicine is producing large amount of data, especially within the fields of “omic” sciences. Nevertheless, other fields, such as neuroscience, are producing similar amount of data by using non-invasive techniques such as imaging, functional magnetic resonance and electroencephalograp...

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Detalles Bibliográficos
Autores principales: Castellani, Gastone, Intrator, Nathan, Remondini, Daniel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143968/
https://www.ncbi.nlm.nih.gov/pubmed/25206359
http://dx.doi.org/10.3389/fgene.2014.00253
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author Castellani, Gastone
Intrator, Nathan
Remondini, Daniel
author_facet Castellani, Gastone
Intrator, Nathan
Remondini, Daniel
author_sort Castellani, Gastone
collection PubMed
description Contemporary biomedicine is producing large amount of data, especially within the fields of “omic” sciences. Nevertheless, other fields, such as neuroscience, are producing similar amount of data by using non-invasive techniques such as imaging, functional magnetic resonance and electroencephalography. Nowadays a big challenge and a new research horizon for Systems Biology is to develop methods to integrate and model this data in an unifying framework capable to disentangle this amazing complexity. In this paper we show how methods from genomic data analysis can be applied to brain data. In particular the concept of pathways, networks and multiplex are discussed. These methods can lead to a clear distinction of various regimes of brain activity. Moreover, this method could be the basis for a Systems Biology analysis of brain data and for the integration of these data in a multivariate and multidimensional framework. The feasibility of this integration is strongly dependent from the feature extraction method used. In our case we used an “alphabet” derived from a multi-resolution analysis that is capable to capture the most relevant information from these complex signals.
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spelling pubmed-41439682014-09-09 Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing Castellani, Gastone Intrator, Nathan Remondini, Daniel Front Genet Genetics Contemporary biomedicine is producing large amount of data, especially within the fields of “omic” sciences. Nevertheless, other fields, such as neuroscience, are producing similar amount of data by using non-invasive techniques such as imaging, functional magnetic resonance and electroencephalography. Nowadays a big challenge and a new research horizon for Systems Biology is to develop methods to integrate and model this data in an unifying framework capable to disentangle this amazing complexity. In this paper we show how methods from genomic data analysis can be applied to brain data. In particular the concept of pathways, networks and multiplex are discussed. These methods can lead to a clear distinction of various regimes of brain activity. Moreover, this method could be the basis for a Systems Biology analysis of brain data and for the integration of these data in a multivariate and multidimensional framework. The feasibility of this integration is strongly dependent from the feature extraction method used. In our case we used an “alphabet” derived from a multi-resolution analysis that is capable to capture the most relevant information from these complex signals. Frontiers Media S.A. 2014-08-26 /pmc/articles/PMC4143968/ /pubmed/25206359 http://dx.doi.org/10.3389/fgene.2014.00253 Text en Copyright © 2014 Castellani, Intrator and Remondini. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Genetics
Castellani, Gastone
Intrator, Nathan
Remondini, Daniel
Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing
title Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing
title_full Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing
title_fullStr Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing
title_full_unstemmed Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing
title_short Systems biology and brain activity in neuronal pathways by smart device and advanced signal processing
title_sort systems biology and brain activity in neuronal pathways by smart device and advanced signal processing
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4143968/
https://www.ncbi.nlm.nih.gov/pubmed/25206359
http://dx.doi.org/10.3389/fgene.2014.00253
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