Cargando…

Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population

Only a small proportion of genetic variation in serum ferritin has been explained by variant genetic studies, and genome-wide association study (GWAS) for serum ferritin has not been investigated widely in Chinese population. We aimed at exploring the novel genetic susceptibility to serum ferritin,...

Descripción completa

Detalles Bibliográficos
Autores principales: Liao, Ming, Shi, Jianying, Huang, Lirong, Gao, Yong, Tan, Aihua, Wu, Chunlei, Lu, Zheng, Yang, Xiaobo, Zhang, Shijun, Hu, Yanlin, Qin, Xue, Li, Jianling, Chen, Gang, Xu, Jianfeng, Mo, Zengnan, Zhang, Haiying
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4146590/
https://www.ncbi.nlm.nih.gov/pubmed/25162662
http://dx.doi.org/10.1371/journal.pone.0105844
_version_ 1782332368699260928
author Liao, Ming
Shi, Jianying
Huang, Lirong
Gao, Yong
Tan, Aihua
Wu, Chunlei
Lu, Zheng
Yang, Xiaobo
Zhang, Shijun
Hu, Yanlin
Qin, Xue
Li, Jianling
Chen, Gang
Xu, Jianfeng
Mo, Zengnan
Zhang, Haiying
author_facet Liao, Ming
Shi, Jianying
Huang, Lirong
Gao, Yong
Tan, Aihua
Wu, Chunlei
Lu, Zheng
Yang, Xiaobo
Zhang, Shijun
Hu, Yanlin
Qin, Xue
Li, Jianling
Chen, Gang
Xu, Jianfeng
Mo, Zengnan
Zhang, Haiying
author_sort Liao, Ming
collection PubMed
description Only a small proportion of genetic variation in serum ferritin has been explained by variant genetic studies, and genome-wide association study (GWAS) for serum ferritin has not been investigated widely in Chinese population. We aimed at exploring the novel genetic susceptibility to serum ferritin, and performed this two stage GWAS in a healthy Chinese population of 3,495 men aged 20–69 y, including 1,999 unrelated subjects in the first stage and 1,496 independent individuals in the second stage. Serum ferritin was measured with electrochemiluminescence immunoassay, and DNA samples were collected for genotyping. A total of 1,940,243 SNPs were tested by using multivariate linear regression analysis. After adjusting for population stratification, age and BMI, the rs5742933 located in the 5′UTR region of PMS1 gene on chromosome 2 was the most significantly associated with ferritin concentrations (P-combined = 2.329×10(−10)) (β = −0.11, 95% CI: −0.14, −0.07). Moreover, this marker was about 200kb away from the candidate gene SLC40A1 which is responsible for iron export. PMS1 gene was the novel genetic susceptibility to serum ferritin in Chinese males and its relation to SLC40A1 needs further study.
format Online
Article
Text
id pubmed-4146590
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-41465902014-08-29 Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population Liao, Ming Shi, Jianying Huang, Lirong Gao, Yong Tan, Aihua Wu, Chunlei Lu, Zheng Yang, Xiaobo Zhang, Shijun Hu, Yanlin Qin, Xue Li, Jianling Chen, Gang Xu, Jianfeng Mo, Zengnan Zhang, Haiying PLoS One Research Article Only a small proportion of genetic variation in serum ferritin has been explained by variant genetic studies, and genome-wide association study (GWAS) for serum ferritin has not been investigated widely in Chinese population. We aimed at exploring the novel genetic susceptibility to serum ferritin, and performed this two stage GWAS in a healthy Chinese population of 3,495 men aged 20–69 y, including 1,999 unrelated subjects in the first stage and 1,496 independent individuals in the second stage. Serum ferritin was measured with electrochemiluminescence immunoassay, and DNA samples were collected for genotyping. A total of 1,940,243 SNPs were tested by using multivariate linear regression analysis. After adjusting for population stratification, age and BMI, the rs5742933 located in the 5′UTR region of PMS1 gene on chromosome 2 was the most significantly associated with ferritin concentrations (P-combined = 2.329×10(−10)) (β = −0.11, 95% CI: −0.14, −0.07). Moreover, this marker was about 200kb away from the candidate gene SLC40A1 which is responsible for iron export. PMS1 gene was the novel genetic susceptibility to serum ferritin in Chinese males and its relation to SLC40A1 needs further study. Public Library of Science 2014-08-27 /pmc/articles/PMC4146590/ /pubmed/25162662 http://dx.doi.org/10.1371/journal.pone.0105844 Text en © 2014 Liao et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Liao, Ming
Shi, Jianying
Huang, Lirong
Gao, Yong
Tan, Aihua
Wu, Chunlei
Lu, Zheng
Yang, Xiaobo
Zhang, Shijun
Hu, Yanlin
Qin, Xue
Li, Jianling
Chen, Gang
Xu, Jianfeng
Mo, Zengnan
Zhang, Haiying
Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population
title Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population
title_full Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population
title_fullStr Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population
title_full_unstemmed Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population
title_short Genome-Wide Association Study Identifies Variants in PMS1 Associated with Serum Ferritin in a Chinese Population
title_sort genome-wide association study identifies variants in pms1 associated with serum ferritin in a chinese population
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4146590/
https://www.ncbi.nlm.nih.gov/pubmed/25162662
http://dx.doi.org/10.1371/journal.pone.0105844
work_keys_str_mv AT liaoming genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT shijianying genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT huanglirong genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT gaoyong genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT tanaihua genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT wuchunlei genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT luzheng genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT yangxiaobo genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT zhangshijun genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT huyanlin genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT qinxue genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT lijianling genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT chengang genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT xujianfeng genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT mozengnan genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation
AT zhanghaiying genomewideassociationstudyidentifiesvariantsinpms1associatedwithserumferritininachinesepopulation