Cargando…

OpenCyto: An Open Source Infrastructure for Scalable, Robust, Reproducible, and Automated, End-to-End Flow Cytometry Data Analysis

Flow cytometry is used increasingly in clinical research for cancer, immunology and vaccines. Technological advances in cytometry instrumentation are increasing the size and dimensionality of data sets, posing a challenge for traditional data management and analysis. Automated analysis methods, desp...

Descripción completa

Detalles Bibliográficos
Autores principales:	Finak, Greg, Frelinger, Jacob, Jiang, Wenxin, Newell, Evan W., Ramey, John, Davis, Mark M., Kalams, Spyros A., De Rosa, Stephen C., Gottardo, Raphael
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2014
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148203/ https://www.ncbi.nlm.nih.gov/pubmed/25167361 http://dx.doi.org/10.1371/journal.pcbi.1003806

Ejemplares similares

ggCyto: next generation open-source visualization software for cytometry
por: Van, Phu, et al.
Publicado: (2018)

CytoML for cross‐platform cytometry data sharing
por: Finak, Greg, et al.
Publicado: (2018)

Identification and visualization of multidimensional antigen‐specific T‐cell populations in polychromatic cytometry data
por: Lin, Lin, et al.
Publicado: (2015)

QUAliFiER: An automated pipeline for quality assessment of gated flow cytometry data
por: Finak, Greg, et al.
Publicado: (2012)

Merging Mixture Components for Cell Population Identification in Flow Cytometry
por: Finak, Greg, et al.
Publicado: (2009)

Optimizing transformations for automated, high throughput analysis of flow cytometry data
por: Finak, Greg, et al.
Publicado: (2010)

CytoPy: An autonomous cytometry analysis framework
por: Burton, Ross J., et al.
Publicado: (2021)

CytoJournal joins 'open access' philosophy
por: Shidham, Vinod B, et al.
Publicado: (2004)

CytoJournal's move to fund Open Access
por: Shidham, Vinod B, et al.
Publicado: (2005)

APRICOT: Advanced Platform for Reproducible Infrastructures in the Cloud via Open Tools
por: Giménez-Alventosa, Vicent, et al.
Publicado: (2020)

Critical assessment of automated flow cytometry data analysis techniques
por: Aghaeepour, Nima, et al.
Publicado: (2013)

CytoNorm: A Normalization Algorithm for Cytometry Data
por: Van Gassen, Sofie, et al.
Publicado: (2019)

Openness as infrastructure
por: Wilbanks, John
Publicado: (2011)

AiiDA 1.0, a scalable computational infrastructure for automated reproducible workflows and data provenance
por: Huber, Sebastiaan P., et al.
Publicado: (2020)

Scalable Infrastructure Supporting Reproducible Nationwide Healthcare Data Analysis toward FAIR Stewardship
por: Kim, Ji-Woo, et al.
Publicado: (2023)

An open-source, end-to-end workflow for multidimensional photoemission spectroscopy
por: Xian, R. Patrick, et al.
Publicado: (2020)

CytoGLMM: conditional differential analysis for flow and mass cytometry experiments
por: Seiler, Christof, et al.
Publicado: (2021)

tidytof: a user-friendly framework for scalable and reproducible high-dimensional cytometry data analysis
por: Keyes, Timothy J, et al.
Publicado: (2023)

Open-ended interview questions and saturation
por: Weller, Susan C., et al.
Publicado: (2018)

A scalable infrastructure for CMS data analysis based on OpenStack Cloud and Gluster file system
por: Toor, Salman, et al.
Publicado: (2014)

End-to-End Jet Classification of Quarks and Gluons with the CMS Open Data
por: Andrews, M., et al.
Publicado: (2019)

Comparative Kinetic Analysis of Closed-Ended and Open-Ended Porous Sensors
por: Zhao, Yiliang, et al.
Publicado: (2016)

ADO: An open digital end-to-end tank based aquaculture platform
por: Suciu, Ioana, et al.
Publicado: (2022)

End-to-End Lip-Reading Open Cloud-Based Speech Architecture
por: Jeon, Sanghun, et al.
Publicado: (2022)

Implementation and assessment of an end-to-end Open Science & Data Collaborations program
por: Wang, Huajin, et al.
Publicado: (2022)

End-to-end anomaly detection system in the CERN Openstack Cloud infrastructure
por: Metaj, Stiven
Publicado: (2022)

A robust and interpretable end-to-end deep learning model for cytometry data
por: Hu, Zicheng, et al.
Publicado: (2020)

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis
por: Finak, Greg, et al.
Publicado: (2018)

Detailed cyto-anatomy and cytometry of Cassia mimosoides L. leaf - An unexplored plant
por: Fichadiya, Gautam, et al.
Publicado: (2017)

End-to-End Jet Classification of Boosted Top Quarks with CMS Open Data
por: Andrews, Michael, et al.
Publicado: (2021)

End-to-End Jet Classification of Boosted Top Quarks with CMS Open Data
por: Burkle, Bjorn
Publicado: (2021)

End-To-End Computer Vision Framework: An Open-Source Platform for Research and Education †
por: Orhei, Ciprian, et al.
Publicado: (2021)

Open-Source Telephony Infrastructure
por: Valentin Vinagrero, Francisco
Publicado: (2018)

Infrastructure Optimization for OpenStack
por: Henni, Mohammed
Publicado: (2018)

OpenStats: A robust and scalable software package for reproducible analysis of high-throughput phenotypic data
por: Haselimashhadi, Hamed, et al.
Publicado: (2020)

Government opens consultation on ending mandatory vaccination
Publicado: (2022)

End-to-end particle and event identification at the Large Hadron Collider with CMS Open Data
por: Alison, John, et al.
Publicado: (2019)

Accelerating End-to-End Deep Learning for Particle Reconstruction using CMS open data
por: Di Croce, Davide
Publicado: (2021)

FASTEN IIoT: An Open Real-Time Platform for Vertical, Horizontal and End-To-End Integration
por: Costa, Felipe S., et al.
Publicado: (2020)

CytoTree: an R/Bioconductor package for analysis and visualization of flow and mass cytometry data
por: Dai, Yuting, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_4r2qcpqh8v9phnhript3ubued5