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Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment
Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long ge...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148953/ https://www.ncbi.nlm.nih.gov/pubmed/25197454 http://dx.doi.org/10.4056/sigs.3828824 |
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author | Breider, Sven Teshima, Hazuki Petersen, Jörn Chertkov, Olga Dalingault, Hajnalka Chen, Amy Pati, Amrita Ivanova, Natalia Lapidus, Alla Goodwin, Lynne A. Chain, Patrick Detter, John C. Rohde, Manfred Tindall, Brian J. Kyrpides, Nikos C. Woyke, Tanja Simon, Meinhard Göker, Markus Klenk, Hans-Peter Brinkhoff, Thorsten |
author_facet | Breider, Sven Teshima, Hazuki Petersen, Jörn Chertkov, Olga Dalingault, Hajnalka Chen, Amy Pati, Amrita Ivanova, Natalia Lapidus, Alla Goodwin, Lynne A. Chain, Patrick Detter, John C. Rohde, Manfred Tindall, Brian J. Kyrpides, Nikos C. Woyke, Tanja Simon, Meinhard Göker, Markus Klenk, Hans-Peter Brinkhoff, Thorsten |
author_sort | Breider, Sven |
collection | PubMed |
description | Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252(T) possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera. |
format | Online Article Text |
id | pubmed-4148953 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-41489532014-09-05 Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment Breider, Sven Teshima, Hazuki Petersen, Jörn Chertkov, Olga Dalingault, Hajnalka Chen, Amy Pati, Amrita Ivanova, Natalia Lapidus, Alla Goodwin, Lynne A. Chain, Patrick Detter, John C. Rohde, Manfred Tindall, Brian J. Kyrpides, Nikos C. Woyke, Tanja Simon, Meinhard Göker, Markus Klenk, Hans-Peter Brinkhoff, Thorsten Stand Genomic Sci Short Genome Reports Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252(T) possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera. Michigan State University 2014-01-25 /pmc/articles/PMC4148953/ /pubmed/25197454 http://dx.doi.org/10.4056/sigs.3828824 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Breider, Sven Teshima, Hazuki Petersen, Jörn Chertkov, Olga Dalingault, Hajnalka Chen, Amy Pati, Amrita Ivanova, Natalia Lapidus, Alla Goodwin, Lynne A. Chain, Patrick Detter, John C. Rohde, Manfred Tindall, Brian J. Kyrpides, Nikos C. Woyke, Tanja Simon, Meinhard Göker, Markus Klenk, Hans-Peter Brinkhoff, Thorsten Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment |
title | Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment |
title_full | Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment |
title_fullStr | Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment |
title_full_unstemmed | Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment |
title_short | Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment |
title_sort | genome sequence and emended description of leisingera nanhaiensis strain dsm 24252(t) isolated from marine sediment |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148953/ https://www.ncbi.nlm.nih.gov/pubmed/25197454 http://dx.doi.org/10.4056/sigs.3828824 |
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