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Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment

Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long ge...

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Autores principales: Breider, Sven, Teshima, Hazuki, Petersen, Jörn, Chertkov, Olga, Dalingault, Hajnalka, Chen, Amy, Pati, Amrita, Ivanova, Natalia, Lapidus, Alla, Goodwin, Lynne A., Chain, Patrick, Detter, John C., Rohde, Manfred, Tindall, Brian J., Kyrpides, Nikos C., Woyke, Tanja, Simon, Meinhard, Göker, Markus, Klenk, Hans-Peter, Brinkhoff, Thorsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148953/
https://www.ncbi.nlm.nih.gov/pubmed/25197454
http://dx.doi.org/10.4056/sigs.3828824
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author Breider, Sven
Teshima, Hazuki
Petersen, Jörn
Chertkov, Olga
Dalingault, Hajnalka
Chen, Amy
Pati, Amrita
Ivanova, Natalia
Lapidus, Alla
Goodwin, Lynne A.
Chain, Patrick
Detter, John C.
Rohde, Manfred
Tindall, Brian J.
Kyrpides, Nikos C.
Woyke, Tanja
Simon, Meinhard
Göker, Markus
Klenk, Hans-Peter
Brinkhoff, Thorsten
author_facet Breider, Sven
Teshima, Hazuki
Petersen, Jörn
Chertkov, Olga
Dalingault, Hajnalka
Chen, Amy
Pati, Amrita
Ivanova, Natalia
Lapidus, Alla
Goodwin, Lynne A.
Chain, Patrick
Detter, John C.
Rohde, Manfred
Tindall, Brian J.
Kyrpides, Nikos C.
Woyke, Tanja
Simon, Meinhard
Göker, Markus
Klenk, Hans-Peter
Brinkhoff, Thorsten
author_sort Breider, Sven
collection PubMed
description Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252(T) possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera.
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spelling pubmed-41489532014-09-05 Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment Breider, Sven Teshima, Hazuki Petersen, Jörn Chertkov, Olga Dalingault, Hajnalka Chen, Amy Pati, Amrita Ivanova, Natalia Lapidus, Alla Goodwin, Lynne A. Chain, Patrick Detter, John C. Rohde, Manfred Tindall, Brian J. Kyrpides, Nikos C. Woyke, Tanja Simon, Meinhard Göker, Markus Klenk, Hans-Peter Brinkhoff, Thorsten Stand Genomic Sci Short Genome Reports Leisingera nanhaiensis DSM 24252(T) is a Gram-negative, motile, rod-shaped marine Alphaproteobacterium, isolated from sandy marine sediments. Here we present the non-contiguous genome sequence and annotation together with a summary of the organism's phenotypic features. The 4,948,550 bp long genome with its 4,832 protein-coding and 64 RNA genes consists of one chromosome and six extrachromosomal elements with lengths of 236 kb, 92 kb, 61 kb, 58 kb, 56 kb, and 35 kb, respectively. The analysis of the genome showed that DSM 24252(T) possesses all genes necessary for dissimilatory nitrite reduction, and the strain was shown to be facultatively anaerobic, a deviation from the original description that calls for an emendation of the species. Also present in the genome are genes coding for a putative prophage, for gene-transfer agents and for the utilization of methylated amines. Phylogenetic analysis and intergenomic distances indicate that L. nanhaiensis might not belong to the genus Leisingera. Michigan State University 2014-01-25 /pmc/articles/PMC4148953/ /pubmed/25197454 http://dx.doi.org/10.4056/sigs.3828824 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Breider, Sven
Teshima, Hazuki
Petersen, Jörn
Chertkov, Olga
Dalingault, Hajnalka
Chen, Amy
Pati, Amrita
Ivanova, Natalia
Lapidus, Alla
Goodwin, Lynne A.
Chain, Patrick
Detter, John C.
Rohde, Manfred
Tindall, Brian J.
Kyrpides, Nikos C.
Woyke, Tanja
Simon, Meinhard
Göker, Markus
Klenk, Hans-Peter
Brinkhoff, Thorsten
Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment
title Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment
title_full Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment
title_fullStr Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment
title_full_unstemmed Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment
title_short Genome sequence and emended description of Leisingera nanhaiensis strain DSM 24252(T) isolated from marine sediment
title_sort genome sequence and emended description of leisingera nanhaiensis strain dsm 24252(t) isolated from marine sediment
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148953/
https://www.ncbi.nlm.nih.gov/pubmed/25197454
http://dx.doi.org/10.4056/sigs.3828824
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