High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway

Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG...

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Autores principales: Bjerga, Gro Elin Kjæreng, Hjerde, Erik, De Santi, Concetta, Williamson, Adele Kim, Smalås, Arne Oskar, Willassen, Nils Peder, Altermark, Bjørn
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2014
Materias:
Short Genome Reports
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148980/
https://www.ncbi.nlm.nih.gov/pubmed/25197453
http://dx.doi.org/10.4056/sigs.5038901
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author Bjerga, Gro Elin Kjæreng
Hjerde, Erik
De Santi, Concetta
Williamson, Adele Kim
Smalås, Arne Oskar
Willassen, Nils Peder
Altermark, Bjørn
author_facet Bjerga, Gro Elin Kjæreng
Hjerde, Erik
De Santi, Concetta
Williamson, Adele Kim
Smalås, Arne Oskar
Willassen, Nils Peder
Altermark, Bjørn
author_sort Bjerga, Gro Elin Kjæreng
collection PubMed
description Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG categories. Also, 62 tRNA genes and 8 rRNA operons were identified. The genome harbors several gene clusters involved in the production of secondary metabolites. Functional screening of the isolate was positive for several enzymatic activities, and some candidate genes coding for those activities are listed in this report. We find that this isolate shows biotechnological potential and is an interesting target for bioprospecting.
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spelling pubmed-41489802014-09-05 High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway Bjerga, Gro Elin Kjæreng Hjerde, Erik De Santi, Concetta Williamson, Adele Kim Smalås, Arne Oskar Willassen, Nils Peder Altermark, Bjørn Stand Genomic Sci Short Genome Reports Here we report the 8 Mb high quality draft genome of Streptomyces sp. strain AW19M42, together with specific properties of the organism and the generation, annotation and analysis of its genome sequence. The genome encodes 7,727 putative open reading frames, of which 6,400 could be assigned with COG categories. Also, 62 tRNA genes and 8 rRNA operons were identified. The genome harbors several gene clusters involved in the production of secondary metabolites. Functional screening of the isolate was positive for several enzymatic activities, and some candidate genes coding for those activities are listed in this report. We find that this isolate shows biotechnological potential and is an interesting target for bioprospecting. Michigan State University 2014-03-01 /pmc/articles/PMC4148980/ /pubmed/25197453 http://dx.doi.org/10.4056/sigs.5038901 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Bjerga, Gro Elin Kjæreng
Hjerde, Erik
De Santi, Concetta
Williamson, Adele Kim
Smalås, Arne Oskar
Willassen, Nils Peder
Altermark, Bjørn
High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_full High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_fullStr High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_full_unstemmed High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_short High quality draft genome sequence of Streptomyces sp. strain AW19M42 isolated from a sea squirt in Northern Norway
title_sort high quality draft genome sequence of streptomyces sp. strain aw19m42 isolated from a sea squirt in northern norway
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148980/
https://www.ncbi.nlm.nih.gov/pubmed/25197453
http://dx.doi.org/10.4056/sigs.5038901
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