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Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil

Granulicella tundricola strain MP5ACTX9(T) is a novel species of the genus Granulicella in subdivision 1 Acidobacteria. G. tundricola is a predominant member of soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. The organism is a cold-ada...

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Autores principales: Rawat, Suman R., Männistö, Minna K., Starovoytov, Valentin, Goodwin, Lynne, Nolan, Matt, Hauser, Loren, Land, Miriam, Davenport, Karen Walston, Woyke, Tanja, Häggblom, Max M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148992/
https://www.ncbi.nlm.nih.gov/pubmed/25197431
http://dx.doi.org/10.4056/sigs.4648353
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author Rawat, Suman R.
Männistö, Minna K.
Starovoytov, Valentin
Goodwin, Lynne
Nolan, Matt
Hauser, Loren
Land, Miriam
Davenport, Karen Walston
Woyke, Tanja
Häggblom, Max M.
author_facet Rawat, Suman R.
Männistö, Minna K.
Starovoytov, Valentin
Goodwin, Lynne
Nolan, Matt
Hauser, Loren
Land, Miriam
Davenport, Karen Walston
Woyke, Tanja
Häggblom, Max M.
author_sort Rawat, Suman R.
collection PubMed
description Granulicella tundricola strain MP5ACTX9(T) is a novel species of the genus Granulicella in subdivision 1 Acidobacteria. G. tundricola is a predominant member of soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. The organism is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates, including gene modules encoding for the carbohydrate-active enzyme (CAZy) families for the breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides such as plant based carbon polymers. The genome of G. tundricola strain MP5ACTX9(T) consists of 4,309,151 bp of a circular chromosome and five mega plasmids with a total genome content of 5,503,984 bp. The genome comprises 4,705 protein-coding genes and 52 RNA genes.
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spelling pubmed-41489922014-09-05 Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. Stand Genomic Sci Short Genome Reports Granulicella tundricola strain MP5ACTX9(T) is a novel species of the genus Granulicella in subdivision 1 Acidobacteria. G. tundricola is a predominant member of soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. The organism is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates, including gene modules encoding for the carbohydrate-active enzyme (CAZy) families for the breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides such as plant based carbon polymers. The genome of G. tundricola strain MP5ACTX9(T) consists of 4,309,151 bp of a circular chromosome and five mega plasmids with a total genome content of 5,503,984 bp. The genome comprises 4,705 protein-coding genes and 52 RNA genes. Michigan State University 2013-12-05 /pmc/articles/PMC4148992/ /pubmed/25197431 http://dx.doi.org/10.4056/sigs.4648353 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Rawat, Suman R.
Männistö, Minna K.
Starovoytov, Valentin
Goodwin, Lynne
Nolan, Matt
Hauser, Loren
Land, Miriam
Davenport, Karen Walston
Woyke, Tanja
Häggblom, Max M.
Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil
title Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil
title_full Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil
title_fullStr Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil
title_full_unstemmed Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil
title_short Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil
title_sort complete genome sequence of granulicella tundricola type strain mp5actx9(t), an acidobacteria from tundra soil
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148992/
https://www.ncbi.nlm.nih.gov/pubmed/25197431
http://dx.doi.org/10.4056/sigs.4648353
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