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Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil
Granulicella tundricola strain MP5ACTX9(T) is a novel species of the genus Granulicella in subdivision 1 Acidobacteria. G. tundricola is a predominant member of soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. The organism is a cold-ada...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148992/ https://www.ncbi.nlm.nih.gov/pubmed/25197431 http://dx.doi.org/10.4056/sigs.4648353 |
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author | Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. |
author_facet | Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. |
author_sort | Rawat, Suman R. |
collection | PubMed |
description | Granulicella tundricola strain MP5ACTX9(T) is a novel species of the genus Granulicella in subdivision 1 Acidobacteria. G. tundricola is a predominant member of soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. The organism is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates, including gene modules encoding for the carbohydrate-active enzyme (CAZy) families for the breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides such as plant based carbon polymers. The genome of G. tundricola strain MP5ACTX9(T) consists of 4,309,151 bp of a circular chromosome and five mega plasmids with a total genome content of 5,503,984 bp. The genome comprises 4,705 protein-coding genes and 52 RNA genes. |
format | Online Article Text |
id | pubmed-4148992 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-41489922014-09-05 Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. Stand Genomic Sci Short Genome Reports Granulicella tundricola strain MP5ACTX9(T) is a novel species of the genus Granulicella in subdivision 1 Acidobacteria. G. tundricola is a predominant member of soil bacterial communities, active at low temperatures and nutrient limiting conditions in Arctic alpine tundra. The organism is a cold-adapted acidophile and a versatile heterotroph that hydrolyzes a suite of sugars and complex polysaccharides. Genome analysis revealed metabolic versatility with genes involved in metabolism and transport of carbohydrates, including gene modules encoding for the carbohydrate-active enzyme (CAZy) families for the breakdown, utilization and biosynthesis of diverse structural and storage polysaccharides such as plant based carbon polymers. The genome of G. tundricola strain MP5ACTX9(T) consists of 4,309,151 bp of a circular chromosome and five mega plasmids with a total genome content of 5,503,984 bp. The genome comprises 4,705 protein-coding genes and 52 RNA genes. Michigan State University 2013-12-05 /pmc/articles/PMC4148992/ /pubmed/25197431 http://dx.doi.org/10.4056/sigs.4648353 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Rawat, Suman R. Männistö, Minna K. Starovoytov, Valentin Goodwin, Lynne Nolan, Matt Hauser, Loren Land, Miriam Davenport, Karen Walston Woyke, Tanja Häggblom, Max M. Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil |
title | Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil |
title_full | Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil |
title_fullStr | Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil |
title_full_unstemmed | Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil |
title_short | Complete genome sequence of Granulicella tundricola type strain MP5ACTX9(T), an Acidobacteria from tundra soil |
title_sort | complete genome sequence of granulicella tundricola type strain mp5actx9(t), an acidobacteria from tundra soil |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148992/ https://www.ncbi.nlm.nih.gov/pubmed/25197431 http://dx.doi.org/10.4056/sigs.4648353 |
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