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Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia

Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation w...

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Autores principales: Walker, Robert, Watkin, Elizabeth, Tian, Rui, Bräu, Lambert, O’Hara, Graham, Goodwin, Lynne, Han, James, Lobos, Elizabeth, Huntemann, Marcel, Pati, Amrita, Woyke, Tanja, Mavromatis, Konstantinos, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Reeve, Wayne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148995/
https://www.ncbi.nlm.nih.gov/pubmed/25197440
http://dx.doi.org/10.4056/sigs.5008793
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author Walker, Robert
Watkin, Elizabeth
Tian, Rui
Bräu, Lambert
O’Hara, Graham
Goodwin, Lynne
Han, James
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Woyke, Tanja
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
Reeve, Wayne
author_facet Walker, Robert
Watkin, Elizabeth
Tian, Rui
Bräu, Lambert
O’Hara, Graham
Goodwin, Lynne
Han, James
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Woyke, Tanja
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
Reeve, Wayne
author_sort Walker, Robert
collection PubMed
description Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation with K. coccinea, but subsequently lost symbiotic competence. Here we describe the features of Burkholderia sp. strain WSM2230, together with genome sequence information and its annotation. The 6,309,801 bp high-quality-draft genome is arranged into 33 scaffolds of 33 contigs containing 5,590 protein-coding genes and 63 RNA-only encoding genes. The genome sequence of WSM2230 failed to identify nodulation genes and provides an explanation for the observed failure of the laboratory grown strain to nodulate. The genome of this strain is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project.
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spelling pubmed-41489952014-09-05 Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia Walker, Robert Watkin, Elizabeth Tian, Rui Bräu, Lambert O’Hara, Graham Goodwin, Lynne Han, James Lobos, Elizabeth Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Reports Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation with K. coccinea, but subsequently lost symbiotic competence. Here we describe the features of Burkholderia sp. strain WSM2230, together with genome sequence information and its annotation. The 6,309,801 bp high-quality-draft genome is arranged into 33 scaffolds of 33 contigs containing 5,590 protein-coding genes and 63 RNA-only encoding genes. The genome sequence of WSM2230 failed to identify nodulation genes and provides an explanation for the observed failure of the laboratory grown strain to nodulate. The genome of this strain is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project. Michigan State University 2013-12-31 /pmc/articles/PMC4148995/ /pubmed/25197440 http://dx.doi.org/10.4056/sigs.5008793 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Walker, Robert
Watkin, Elizabeth
Tian, Rui
Bräu, Lambert
O’Hara, Graham
Goodwin, Lynne
Han, James
Lobos, Elizabeth
Huntemann, Marcel
Pati, Amrita
Woyke, Tanja
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
Reeve, Wayne
Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia
title Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia
title_full Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia
title_fullStr Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia
title_full_unstemmed Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia
title_short Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia
title_sort genome sequence of the acid-tolerant burkholderia sp. strain wsm2230 from karijini national park, australia
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148995/
https://www.ncbi.nlm.nih.gov/pubmed/25197440
http://dx.doi.org/10.4056/sigs.5008793
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