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Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia
Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation w...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148995/ https://www.ncbi.nlm.nih.gov/pubmed/25197440 http://dx.doi.org/10.4056/sigs.5008793 |
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author | Walker, Robert Watkin, Elizabeth Tian, Rui Bräu, Lambert O’Hara, Graham Goodwin, Lynne Han, James Lobos, Elizabeth Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne |
author_facet | Walker, Robert Watkin, Elizabeth Tian, Rui Bräu, Lambert O’Hara, Graham Goodwin, Lynne Han, James Lobos, Elizabeth Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne |
author_sort | Walker, Robert |
collection | PubMed |
description | Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation with K. coccinea, but subsequently lost symbiotic competence. Here we describe the features of Burkholderia sp. strain WSM2230, together with genome sequence information and its annotation. The 6,309,801 bp high-quality-draft genome is arranged into 33 scaffolds of 33 contigs containing 5,590 protein-coding genes and 63 RNA-only encoding genes. The genome sequence of WSM2230 failed to identify nodulation genes and provides an explanation for the observed failure of the laboratory grown strain to nodulate. The genome of this strain is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project. |
format | Online Article Text |
id | pubmed-4148995 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-41489952014-09-05 Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia Walker, Robert Watkin, Elizabeth Tian, Rui Bräu, Lambert O’Hara, Graham Goodwin, Lynne Han, James Lobos, Elizabeth Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Reports Burkholderia sp. strain WSM2230 is an aerobic, motile, Gram-negative, non-spore-forming acid-tolerant rod isolated from acidic soil collected in 2001 from Karijini National Park, Western Australia, using Kennedia coccinea (Coral Vine) as a host. WSM2230 was initially effective in nitrogen-fixation with K. coccinea, but subsequently lost symbiotic competence. Here we describe the features of Burkholderia sp. strain WSM2230, together with genome sequence information and its annotation. The 6,309,801 bp high-quality-draft genome is arranged into 33 scaffolds of 33 contigs containing 5,590 protein-coding genes and 63 RNA-only encoding genes. The genome sequence of WSM2230 failed to identify nodulation genes and provides an explanation for the observed failure of the laboratory grown strain to nodulate. The genome of this strain is one of 100 sequenced as part of the DOE Joint Genome Institute 2010 Genomic Encyclopedia for Bacteria and Archaea-Root Nodule Bacteria (GEBA-RNB) project. Michigan State University 2013-12-31 /pmc/articles/PMC4148995/ /pubmed/25197440 http://dx.doi.org/10.4056/sigs.5008793 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Walker, Robert Watkin, Elizabeth Tian, Rui Bräu, Lambert O’Hara, Graham Goodwin, Lynne Han, James Lobos, Elizabeth Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Reeve, Wayne Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia |
title | Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia |
title_full | Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia |
title_fullStr | Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia |
title_full_unstemmed | Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia |
title_short | Genome sequence of the acid-tolerant Burkholderia sp. strain WSM2230 from Karijini National Park, Australia |
title_sort | genome sequence of the acid-tolerant burkholderia sp. strain wsm2230 from karijini national park, australia |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4148995/ https://www.ncbi.nlm.nih.gov/pubmed/25197440 http://dx.doi.org/10.4056/sigs.5008793 |
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