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Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas

Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas....

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Autores principales: Reeve, Wayne, Parker, Matthew, Tian, Rui, Goodwin, Lynne, Teshima, Hazuki, Tapia, Roxanne, Han, Cliff, Han, James, Liolios, Konstantinos, Huntemann, Marcel, Pati, Amrita, Woyke, Tanja, Mavromatis, Konstantinos, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149012/
https://www.ncbi.nlm.nih.gov/pubmed/25197490
http://dx.doi.org/10.4056/sigs.5249382
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author Reeve, Wayne
Parker, Matthew
Tian, Rui
Goodwin, Lynne
Teshima, Hazuki
Tapia, Roxanne
Han, Cliff
Han, James
Liolios, Konstantinos
Huntemann, Marcel
Pati, Amrita
Woyke, Tanja
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
author_facet Reeve, Wayne
Parker, Matthew
Tian, Rui
Goodwin, Lynne
Teshima, Hazuki
Tapia, Roxanne
Han, Cliff
Han, James
Liolios, Konstantinos
Huntemann, Marcel
Pati, Amrita
Woyke, Tanja
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
author_sort Reeve, Wayne
collection PubMed
description Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a highly specific nitrogen-fixing symbiosis with endemic L. texensis and no other Lupinus species can form an effective nitrogen-fixing symbiosis with this isolate. Here we describe the features of M. lupini LUT6(T), together with genome sequence information and its annotation. The 9,633,614 bp improved high quality draft genome is arranged into 160 scaffolds of 1,366 contigs containing 10,864 protein-coding genes and 87 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of a DOE Joint Genome Institute 2010 Community Sequencing Project.
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spelling pubmed-41490122014-09-05 Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas Reeve, Wayne Parker, Matthew Tian, Rui Goodwin, Lynne Teshima, Hazuki Tapia, Roxanne Han, Cliff Han, James Liolios, Konstantinos Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Stand Genomic Sci Short Genome Reports Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a highly specific nitrogen-fixing symbiosis with endemic L. texensis and no other Lupinus species can form an effective nitrogen-fixing symbiosis with this isolate. Here we describe the features of M. lupini LUT6(T), together with genome sequence information and its annotation. The 9,633,614 bp improved high quality draft genome is arranged into 160 scaffolds of 1,366 contigs containing 10,864 protein-coding genes and 87 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of a DOE Joint Genome Institute 2010 Community Sequencing Project. Michigan State University 2014-03-01 /pmc/articles/PMC4149012/ /pubmed/25197490 http://dx.doi.org/10.4056/sigs.5249382 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Reeve, Wayne
Parker, Matthew
Tian, Rui
Goodwin, Lynne
Teshima, Hazuki
Tapia, Roxanne
Han, Cliff
Han, James
Liolios, Konstantinos
Huntemann, Marcel
Pati, Amrita
Woyke, Tanja
Mavromatis, Konstantinos
Markowitz, Victor
Ivanova, Natalia
Kyrpides, Nikos
Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas
title Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas
title_full Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas
title_fullStr Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas
title_full_unstemmed Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas
title_short Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas
title_sort genome sequence of microvirga lupini strain lut6(t), a novel lupinus alphaproteobacterial microsymbiont from texas
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149012/
https://www.ncbi.nlm.nih.gov/pubmed/25197490
http://dx.doi.org/10.4056/sigs.5249382
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