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Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas
Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas....
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149012/ https://www.ncbi.nlm.nih.gov/pubmed/25197490 http://dx.doi.org/10.4056/sigs.5249382 |
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author | Reeve, Wayne Parker, Matthew Tian, Rui Goodwin, Lynne Teshima, Hazuki Tapia, Roxanne Han, Cliff Han, James Liolios, Konstantinos Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos |
author_facet | Reeve, Wayne Parker, Matthew Tian, Rui Goodwin, Lynne Teshima, Hazuki Tapia, Roxanne Han, Cliff Han, James Liolios, Konstantinos Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos |
author_sort | Reeve, Wayne |
collection | PubMed |
description | Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a highly specific nitrogen-fixing symbiosis with endemic L. texensis and no other Lupinus species can form an effective nitrogen-fixing symbiosis with this isolate. Here we describe the features of M. lupini LUT6(T), together with genome sequence information and its annotation. The 9,633,614 bp improved high quality draft genome is arranged into 160 scaffolds of 1,366 contigs containing 10,864 protein-coding genes and 87 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of a DOE Joint Genome Institute 2010 Community Sequencing Project. |
format | Online Article Text |
id | pubmed-4149012 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-41490122014-09-05 Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas Reeve, Wayne Parker, Matthew Tian, Rui Goodwin, Lynne Teshima, Hazuki Tapia, Roxanne Han, Cliff Han, James Liolios, Konstantinos Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Stand Genomic Sci Short Genome Reports Microvirga lupini LUT6(T) is an aerobic, non-motile, Gram-negative, non-spore-forming rod that can exist as a soil saprophyte or as a legume microsymbiont of Lupinus texensis. LUT6(T) was isolated in 2006 from a nodule recovered from the roots of the annual L. texensis growing in Travis Co., Texas. LUT6(T) forms a highly specific nitrogen-fixing symbiosis with endemic L. texensis and no other Lupinus species can form an effective nitrogen-fixing symbiosis with this isolate. Here we describe the features of M. lupini LUT6(T), together with genome sequence information and its annotation. The 9,633,614 bp improved high quality draft genome is arranged into 160 scaffolds of 1,366 contigs containing 10,864 protein-coding genes and 87 RNA-only encoding genes, and is one of 20 rhizobial genomes sequenced as part of a DOE Joint Genome Institute 2010 Community Sequencing Project. Michigan State University 2014-03-01 /pmc/articles/PMC4149012/ /pubmed/25197490 http://dx.doi.org/10.4056/sigs.5249382 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Reeve, Wayne Parker, Matthew Tian, Rui Goodwin, Lynne Teshima, Hazuki Tapia, Roxanne Han, Cliff Han, James Liolios, Konstantinos Huntemann, Marcel Pati, Amrita Woyke, Tanja Mavromatis, Konstantinos Markowitz, Victor Ivanova, Natalia Kyrpides, Nikos Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas |
title | Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas |
title_full | Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas |
title_fullStr | Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas |
title_full_unstemmed | Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas |
title_short | Genome sequence of Microvirga lupini strain LUT6(T), a novel Lupinus alphaproteobacterial microsymbiont from Texas |
title_sort | genome sequence of microvirga lupini strain lut6(t), a novel lupinus alphaproteobacterial microsymbiont from texas |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149012/ https://www.ncbi.nlm.nih.gov/pubmed/25197490 http://dx.doi.org/10.4056/sigs.5249382 |
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