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Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum
Rhizobium leguminosarum bv. trifolii is a soil-inhabiting bacterium that has the capacity to be an effective N(2)-fixing microsymbiont of Trifolium (clover) species. R. leguminosarum bv. trifolii strain WSM1689 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root...
Autores principales: | , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149022/ https://www.ncbi.nlm.nih.gov/pubmed/25197438 http://dx.doi.org/10.4056/sigs.4988693 |
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author | Terpolilli, Jason Rui, Tian Yates, Ron Howieson, John Poole, Philip Munk, Christine Tapia, Roxanne Han, Cliff Markowitz, Victor Tatiparthi, Reddy Mavrommatis, Konstantinos Ivanova, Natalia Pati, Amrita Goodwin, Lynne Woyke, Tanja Kyrpides, Nikos Reeve, Wayne |
author_facet | Terpolilli, Jason Rui, Tian Yates, Ron Howieson, John Poole, Philip Munk, Christine Tapia, Roxanne Han, Cliff Markowitz, Victor Tatiparthi, Reddy Mavrommatis, Konstantinos Ivanova, Natalia Pati, Amrita Goodwin, Lynne Woyke, Tanja Kyrpides, Nikos Reeve, Wayne |
author_sort | Terpolilli, Jason |
collection | PubMed |
description | Rhizobium leguminosarum bv. trifolii is a soil-inhabiting bacterium that has the capacity to be an effective N(2)-fixing microsymbiont of Trifolium (clover) species. R. leguminosarum bv. trifolii strain WSM1689 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Trifolium uniflorum collected on the edge of a valley 6 km from Eggares on the Greek Island of Naxos. Although WSM1689 is capable of highly effective N(2)-fixation with T. uniflorum, it is either unable to nodulate or unable to fix N(2) with a wide range of both perennial and annual clovers originating from Europe, North America and Africa. WSM1689 therefore possesses a very narrow host range for effective N(2) fixation and can thus play a valuable role in determining the geographic and phenological barriers to symbiotic performance in the genus Trifolium. Here we describe the features of R. leguminosarum bv. trifolii strain WSM1689, together with the complete genome sequence and its annotation. The 6,903,379 bp genome contains 6,709 protein-coding genes and 89 RNA-only encoding genes. This multipartite genome contains six distinct replicons; a chromosome of size 4,854,518 bp and five plasmids of size 667,306, 518,052, 341,391, 262,704 and 259,408 bp. This rhizobial genome is one of 20 sequenced as part of a DOE Joint Genome Institute 2010 Community Sequencing Program. |
format | Online Article Text |
id | pubmed-4149022 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-41490222014-09-05 Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum Terpolilli, Jason Rui, Tian Yates, Ron Howieson, John Poole, Philip Munk, Christine Tapia, Roxanne Han, Cliff Markowitz, Victor Tatiparthi, Reddy Mavrommatis, Konstantinos Ivanova, Natalia Pati, Amrita Goodwin, Lynne Woyke, Tanja Kyrpides, Nikos Reeve, Wayne Stand Genomic Sci Short Genome Reports Rhizobium leguminosarum bv. trifolii is a soil-inhabiting bacterium that has the capacity to be an effective N(2)-fixing microsymbiont of Trifolium (clover) species. R. leguminosarum bv. trifolii strain WSM1689 is an aerobic, motile, Gram-negative, non-spore-forming rod that was isolated from a root nodule of Trifolium uniflorum collected on the edge of a valley 6 km from Eggares on the Greek Island of Naxos. Although WSM1689 is capable of highly effective N(2)-fixation with T. uniflorum, it is either unable to nodulate or unable to fix N(2) with a wide range of both perennial and annual clovers originating from Europe, North America and Africa. WSM1689 therefore possesses a very narrow host range for effective N(2) fixation and can thus play a valuable role in determining the geographic and phenological barriers to symbiotic performance in the genus Trifolium. Here we describe the features of R. leguminosarum bv. trifolii strain WSM1689, together with the complete genome sequence and its annotation. The 6,903,379 bp genome contains 6,709 protein-coding genes and 89 RNA-only encoding genes. This multipartite genome contains six distinct replicons; a chromosome of size 4,854,518 bp and five plasmids of size 667,306, 518,052, 341,391, 262,704 and 259,408 bp. This rhizobial genome is one of 20 sequenced as part of a DOE Joint Genome Institute 2010 Community Sequencing Program. Michigan State University 2013-12-31 /pmc/articles/PMC4149022/ /pubmed/25197438 http://dx.doi.org/10.4056/sigs.4988693 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Terpolilli, Jason Rui, Tian Yates, Ron Howieson, John Poole, Philip Munk, Christine Tapia, Roxanne Han, Cliff Markowitz, Victor Tatiparthi, Reddy Mavrommatis, Konstantinos Ivanova, Natalia Pati, Amrita Goodwin, Lynne Woyke, Tanja Kyrpides, Nikos Reeve, Wayne Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum |
title | Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum |
title_full | Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum |
title_fullStr | Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum |
title_full_unstemmed | Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum |
title_short | Genome sequence of Rhizobium leguminosarum bv trifolii strain WSM1689, the microsymbiont of the one flowered clover Trifolium uniflorum |
title_sort | genome sequence of rhizobium leguminosarum bv trifolii strain wsm1689, the microsymbiont of the one flowered clover trifolium uniflorum |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149022/ https://www.ncbi.nlm.nih.gov/pubmed/25197438 http://dx.doi.org/10.4056/sigs.4988693 |
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