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Genomic analysis of Skermanella stibiiresistens type strain SB22(T)

Members of genus Skermanella were described as Gram-negative, motile, aerobic, rod-shaped, obligate-heterotrophic bacteria and unable to fix nitrogen. In this study, the genome sequence of Skermanella stibiiresistens SB22(T) is reported. Phylogenetic analysis using core proteins confirmed the phylog...

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Detalles Bibliográficos
Autores principales: Zhu, Wentao, Huang, Jing, Li, Mingshun, Li, Xiangyang, Wang, Gejiao
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149033/
https://www.ncbi.nlm.nih.gov/pubmed/25197493
http://dx.doi.org/10.4056/sigs.5751047
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author Zhu, Wentao
Huang, Jing
Li, Mingshun
Li, Xiangyang
Wang, Gejiao
author_facet Zhu, Wentao
Huang, Jing
Li, Mingshun
Li, Xiangyang
Wang, Gejiao
author_sort Zhu, Wentao
collection PubMed
description Members of genus Skermanella were described as Gram-negative, motile, aerobic, rod-shaped, obligate-heterotrophic bacteria and unable to fix nitrogen. In this study, the genome sequence of Skermanella stibiiresistens SB22(T) is reported. Phylogenetic analysis using core proteins confirmed the phylogenetic assignment based on 16S rRNA gene sequences. Strain SB22(T) has all the proteins for complete glycolysis, tricarboxylic acid cycle and pentose phosphate pathway. The RuBisCO encoding genes cbbL1S1 and nitrogenase delta subunit gene anfG are absent, consistent with its inability to fix carbon and nitrogen, respectively. In addition, the genome possesses a series of flagellar assembly and chemotaxis genes to ensure its motility.
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spelling pubmed-41490332014-09-05 Genomic analysis of Skermanella stibiiresistens type strain SB22(T) Zhu, Wentao Huang, Jing Li, Mingshun Li, Xiangyang Wang, Gejiao Stand Genomic Sci Short Genome Reports Members of genus Skermanella were described as Gram-negative, motile, aerobic, rod-shaped, obligate-heterotrophic bacteria and unable to fix nitrogen. In this study, the genome sequence of Skermanella stibiiresistens SB22(T) is reported. Phylogenetic analysis using core proteins confirmed the phylogenetic assignment based on 16S rRNA gene sequences. Strain SB22(T) has all the proteins for complete glycolysis, tricarboxylic acid cycle and pentose phosphate pathway. The RuBisCO encoding genes cbbL1S1 and nitrogenase delta subunit gene anfG are absent, consistent with its inability to fix carbon and nitrogen, respectively. In addition, the genome possesses a series of flagellar assembly and chemotaxis genes to ensure its motility. Michigan State University 2014-04-20 /pmc/articles/PMC4149033/ /pubmed/25197493 http://dx.doi.org/10.4056/sigs.5751047 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Zhu, Wentao
Huang, Jing
Li, Mingshun
Li, Xiangyang
Wang, Gejiao
Genomic analysis of Skermanella stibiiresistens type strain SB22(T)
title Genomic analysis of Skermanella stibiiresistens type strain SB22(T)
title_full Genomic analysis of Skermanella stibiiresistens type strain SB22(T)
title_fullStr Genomic analysis of Skermanella stibiiresistens type strain SB22(T)
title_full_unstemmed Genomic analysis of Skermanella stibiiresistens type strain SB22(T)
title_short Genomic analysis of Skermanella stibiiresistens type strain SB22(T)
title_sort genomic analysis of skermanella stibiiresistens type strain sb22(t)
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149033/
https://www.ncbi.nlm.nih.gov/pubmed/25197493
http://dx.doi.org/10.4056/sigs.5751047
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