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Genomic analysis of Skermanella stibiiresistens type strain SB22(T)
Members of genus Skermanella were described as Gram-negative, motile, aerobic, rod-shaped, obligate-heterotrophic bacteria and unable to fix nitrogen. In this study, the genome sequence of Skermanella stibiiresistens SB22(T) is reported. Phylogenetic analysis using core proteins confirmed the phylog...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149033/ https://www.ncbi.nlm.nih.gov/pubmed/25197493 http://dx.doi.org/10.4056/sigs.5751047 |
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author | Zhu, Wentao Huang, Jing Li, Mingshun Li, Xiangyang Wang, Gejiao |
author_facet | Zhu, Wentao Huang, Jing Li, Mingshun Li, Xiangyang Wang, Gejiao |
author_sort | Zhu, Wentao |
collection | PubMed |
description | Members of genus Skermanella were described as Gram-negative, motile, aerobic, rod-shaped, obligate-heterotrophic bacteria and unable to fix nitrogen. In this study, the genome sequence of Skermanella stibiiresistens SB22(T) is reported. Phylogenetic analysis using core proteins confirmed the phylogenetic assignment based on 16S rRNA gene sequences. Strain SB22(T) has all the proteins for complete glycolysis, tricarboxylic acid cycle and pentose phosphate pathway. The RuBisCO encoding genes cbbL1S1 and nitrogenase delta subunit gene anfG are absent, consistent with its inability to fix carbon and nitrogen, respectively. In addition, the genome possesses a series of flagellar assembly and chemotaxis genes to ensure its motility. |
format | Online Article Text |
id | pubmed-4149033 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-41490332014-09-05 Genomic analysis of Skermanella stibiiresistens type strain SB22(T) Zhu, Wentao Huang, Jing Li, Mingshun Li, Xiangyang Wang, Gejiao Stand Genomic Sci Short Genome Reports Members of genus Skermanella were described as Gram-negative, motile, aerobic, rod-shaped, obligate-heterotrophic bacteria and unable to fix nitrogen. In this study, the genome sequence of Skermanella stibiiresistens SB22(T) is reported. Phylogenetic analysis using core proteins confirmed the phylogenetic assignment based on 16S rRNA gene sequences. Strain SB22(T) has all the proteins for complete glycolysis, tricarboxylic acid cycle and pentose phosphate pathway. The RuBisCO encoding genes cbbL1S1 and nitrogenase delta subunit gene anfG are absent, consistent with its inability to fix carbon and nitrogen, respectively. In addition, the genome possesses a series of flagellar assembly and chemotaxis genes to ensure its motility. Michigan State University 2014-04-20 /pmc/articles/PMC4149033/ /pubmed/25197493 http://dx.doi.org/10.4056/sigs.5751047 Text en Copyright © retained by original authors http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Zhu, Wentao Huang, Jing Li, Mingshun Li, Xiangyang Wang, Gejiao Genomic analysis of Skermanella stibiiresistens type strain SB22(T) |
title | Genomic analysis of Skermanella stibiiresistens type strain SB22(T) |
title_full | Genomic analysis of Skermanella stibiiresistens type strain SB22(T) |
title_fullStr | Genomic analysis of Skermanella stibiiresistens type strain SB22(T) |
title_full_unstemmed | Genomic analysis of Skermanella stibiiresistens type strain SB22(T) |
title_short | Genomic analysis of Skermanella stibiiresistens type strain SB22(T) |
title_sort | genomic analysis of skermanella stibiiresistens type strain sb22(t) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149033/ https://www.ncbi.nlm.nih.gov/pubmed/25197493 http://dx.doi.org/10.4056/sigs.5751047 |
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