Epiviz: interactive visual analytics for functional genomics data

Visualization is an integral aspect of genomics data analysis where the output of procedures performed in computing environments like Bioconductor is often visualized. Algorithmic-statistical analysis and interactive visualization are usually disjoint but are most effective when used iteratively. We...

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Detalles Bibliográficos
Autores principales: Chelaru, Florin, Smith, Llewellyn, Goldstein, Naomi, Bravo, Héctor Corrada
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2014
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149593/
https://www.ncbi.nlm.nih.gov/pubmed/25086505
http://dx.doi.org/10.1038/nmeth.3038
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author Chelaru, Florin
Smith, Llewellyn
Goldstein, Naomi
Bravo, Héctor Corrada
author_facet Chelaru, Florin
Smith, Llewellyn
Goldstein, Naomi
Bravo, Héctor Corrada
author_sort Chelaru, Florin
collection PubMed
description Visualization is an integral aspect of genomics data analysis where the output of procedures performed in computing environments like Bioconductor is often visualized. Algorithmic-statistical analysis and interactive visualization are usually disjoint but are most effective when used iteratively. We introduce tools that provide this tight-knit integration: Epiviz (http://epiviz.cbcb.umd.edu), a web-based genome browser, and the Epivizr Bioconductor package allowing interactive, extensible and reproducible visualization within a state-of-the-art data analysis platform.
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spelling pubmed-41495932015-03-01 Epiviz: interactive visual analytics for functional genomics data Chelaru, Florin Smith, Llewellyn Goldstein, Naomi Bravo, Héctor Corrada Nat Methods Article Visualization is an integral aspect of genomics data analysis where the output of procedures performed in computing environments like Bioconductor is often visualized. Algorithmic-statistical analysis and interactive visualization are usually disjoint but are most effective when used iteratively. We introduce tools that provide this tight-knit integration: Epiviz (http://epiviz.cbcb.umd.edu), a web-based genome browser, and the Epivizr Bioconductor package allowing interactive, extensible and reproducible visualization within a state-of-the-art data analysis platform. 2014-08-03 2014-09 /pmc/articles/PMC4149593/ /pubmed/25086505 http://dx.doi.org/10.1038/nmeth.3038 Text en http://www.nature.com/authors/editorial_policies/license.html#terms Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Chelaru, Florin
Smith, Llewellyn
Goldstein, Naomi
Bravo, Héctor Corrada
Epiviz: interactive visual analytics for functional genomics data
title Epiviz: interactive visual analytics for functional genomics data
title_full Epiviz: interactive visual analytics for functional genomics data
title_fullStr Epiviz: interactive visual analytics for functional genomics data
title_full_unstemmed Epiviz: interactive visual analytics for functional genomics data
title_short Epiviz: interactive visual analytics for functional genomics data
title_sort epiviz: interactive visual analytics for functional genomics data
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149593/
https://www.ncbi.nlm.nih.gov/pubmed/25086505
http://dx.doi.org/10.1038/nmeth.3038
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AT goldsteinnaomi epivizinteractivevisualanalyticsforfunctionalgenomicsdata
AT bravohectorcorrada epivizinteractivevisualanalyticsforfunctionalgenomicsdata

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