Cargando…

141 Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes

As genome wide association studies plus whole genome sequence analyses for complex human disease determinants are expanding, it seems useful to develop strategies to facilitate large data sharing, rapid replication and validation of provocative statistical associations that straddle the threshold fo...

Descripción completa

Detalles Bibliográficos
Autores principales: O'Brien, Stephen J, Svitin, Anton, Malov, Sergey, Cherkazov, Nikolay, Dobrynin, Pavel, Geerts, Paul, Troyer, Jennifer, Hendrickson-Lambert, Sher, Sezgin, Efe, Hutcheson, Holli
Formato: Online Artículo Texto
Lenguaje:English
Publicado: JAIDS Journal of Acquired Immune Deficiency Syndromes 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149668/
http://dx.doi.org/10.1097/01.qai.0000446723.52450.65
_version_ 1782332804210622464
author O'Brien, Stephen J
Svitin, Anton
Malov, Sergey
Cherkazov, Nikolay
Dobrynin, Pavel
Geerts, Paul
Troyer, Jennifer
Hendrickson-Lambert, Sher
Sezgin, Efe
Hutcheson, Holli
author_facet O'Brien, Stephen J
Svitin, Anton
Malov, Sergey
Cherkazov, Nikolay
Dobrynin, Pavel
Geerts, Paul
Troyer, Jennifer
Hendrickson-Lambert, Sher
Sezgin, Efe
Hutcheson, Holli
author_sort O'Brien, Stephen J
collection PubMed
description As genome wide association studies plus whole genome sequence analyses for complex human disease determinants are expanding, it seems useful to develop strategies to facilitate large data sharing, rapid replication and validation of provocative statistical associations that straddle the threshold for genome wide significance. At this conference, we shall announce GWATCH, (Genome Wide Association Tracks Chromosome Highway) a web based data release platform that can freely display and inspect unabridged genome tracked association data without compromising privacy or Informed Consent constrictions, allowing for rapid discovery and replication opportunities. We illustrate the utility with HIV-AIDS resistance genes screened in combined large multicenter cohort studies GWAS (MACS, HGDS, MHGS, ALLIVE, LSOCA HOMER) developed and studied over the last decades.
format Online
Article
Text
id pubmed-4149668
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher JAIDS Journal of Acquired Immune Deficiency Syndromes
record_format MEDLINE/PubMed
spelling pubmed-41496682014-09-24 141 Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes O'Brien, Stephen J Svitin, Anton Malov, Sergey Cherkazov, Nikolay Dobrynin, Pavel Geerts, Paul Troyer, Jennifer Hendrickson-Lambert, Sher Sezgin, Efe Hutcheson, Holli J Acquir Immune Defic Syndr Abstract As genome wide association studies plus whole genome sequence analyses for complex human disease determinants are expanding, it seems useful to develop strategies to facilitate large data sharing, rapid replication and validation of provocative statistical associations that straddle the threshold for genome wide significance. At this conference, we shall announce GWATCH, (Genome Wide Association Tracks Chromosome Highway) a web based data release platform that can freely display and inspect unabridged genome tracked association data without compromising privacy or Informed Consent constrictions, allowing for rapid discovery and replication opportunities. We illustrate the utility with HIV-AIDS resistance genes screened in combined large multicenter cohort studies GWAS (MACS, HGDS, MHGS, ALLIVE, LSOCA HOMER) developed and studied over the last decades. JAIDS Journal of Acquired Immune Deficiency Syndromes 2014-04 2014-03-07 /pmc/articles/PMC4149668/ http://dx.doi.org/10.1097/01.qai.0000446723.52450.65 Text en Copyright © 2014 by Lippincott Williams & Wilkins http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivitives 3.0 License, where it is permissible to download and share the work provided it is properly cited. The work cannot be changed in any way or used commercially.
spellingShingle Abstract
O'Brien, Stephen J
Svitin, Anton
Malov, Sergey
Cherkazov, Nikolay
Dobrynin, Pavel
Geerts, Paul
Troyer, Jennifer
Hendrickson-Lambert, Sher
Sezgin, Efe
Hutcheson, Holli
141 Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes
title 141 Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes
title_full 141 Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes
title_fullStr 141 Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes
title_full_unstemmed 141 Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes
title_short 141 Gene Discovery and Data Sharing in Genome Wide Association Analyses: lessons form AIDS genetic restriction genes
title_sort 141 gene discovery and data sharing in genome wide association analyses: lessons form aids genetic restriction genes
topic Abstract
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4149668/
http://dx.doi.org/10.1097/01.qai.0000446723.52450.65
work_keys_str_mv AT obrienstephenj 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT svitinanton 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT malovsergey 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT cherkazovnikolay 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT dobryninpavel 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT geertspaul 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT troyerjennifer 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT hendricksonlambertsher 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT sezginefe 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes
AT hutchesonholli 141genediscoveryanddatasharingingenomewideassociationanalyseslessonsformaidsgeneticrestrictiongenes