Cargando…

Integrating information retrieval with distant supervision for Gene Ontology annotation

This article describes our participation of the Gene Ontology Curation task (GO task) in BioCreative IV where we participated in both subtasks: A) identification of GO evidence sentences (GOESs) for relevant genes in full-text articles and B) prediction of GO terms for relevant genes in full-text ar...

Descripción completa

Detalles Bibliográficos
Autores principales:	Zhu, Dongqing, Li, Dingcheng, Carterette, Ben, Liu, Hongfang
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	Original Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4150992/ https://www.ncbi.nlm.nih.gov/pubmed/25183856 http://dx.doi.org/10.1093/database/bau087

Ejemplares similares

Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot
por: Ehrler, Frédéric, et al.
Publicado: (2005)

Using distant supervision to augment manually annotated data for relation extraction
por: Su, Peng, et al.
Publicado: (2019)

Closing the loop: from paper to protein annotation using supervised Gene Ontology classification
por: Gobeill, Julien, et al.
Publicado: (2014)

Logical Gene Ontology Annotations (GOAL): exploring gene ontology annotations with OWL
por: Jupp, Simon, et al.
Publicado: (2012)

Ontology-based information retrieval for healthcare systems
por: Jain, Vishal, et al.
Publicado: (2020)

On gene ontology and function annotation
por: Pal, Debnath
Publicado: (2006)

Gene Ontology Annotations and Resources
Publicado: (2013)

Information-theoretic evaluation of predicted ontological annotations
por: Clark, Wyatt T., et al.
Publicado: (2013)

The GOA database in 2009—an integrated Gene Ontology Annotation resource
por: Barrell, Daniel, et al.
Publicado: (2009)

Annotating the Function of the Human Genome with Gene Ontology and Disease Ontology
por: Hu, Yang, et al.
Publicado: (2016)

OAHG: an integrated resource for annotating human genes with multi-level ontologies
por: Cheng, Liang, et al.
Publicado: (2016)

Gene Ontology annotations at SGD: new data sources and annotation methods
por: Hong, Eurie L., et al.
Publicado: (2008)

Factoid Question Answering with Distant Supervision
por: Zhang, Hongzhi, et al.
Publicado: (2018)

Semantic Annotation for Biological Information Retrieval System
por: Oshaiba, Mohamed Marouf Z., et al.
Publicado: (2015)

Textpresso: An Ontology-Based Information Retrieval and Extraction System for Biological Literature
por: Müller, Hans-Michael, et al.
Publicado: (2004)

User centered and ontology based information retrieval system for life sciences
por: Sy, Mohameth-François, et al.
Publicado: (2012)

Quality of Computationally Inferred Gene Ontology Annotations
por: Škunca, Nives, et al.
Publicado: (2012)

Computational algorithms to predict Gene Ontology annotations
por: Pinoli, Pietro, et al.
Publicado: (2015)

Gene Ontology Meta Annotator for Plants (GOMAP)
por: Wimalanathan, Kokulapalan, et al.
Publicado: (2021)

Distant supervision for medical concept normalization
por: Pattisapu, Nikhil, et al.
Publicado: (2020)

Distant Supervision for Extractive Question Summarization
por: Ishigaki, Tatsuya, et al.
Publicado: (2020)

The epidemiology ontology: an ontology for the semantic annotation of epidemiological resources
por: Pesquita, Catia, et al.
Publicado: (2014)

Ontology driven framework for multimedia information retrieval in P2P network
por: Sokhn, Maria
Publicado: (2014)

OntoTrader: An Ontological Web Trading Agent Approach for Environmental Information Retrieval
por: Iribarne, Luis, et al.
Publicado: (2014)

A Semantic Medical Multimedia Retrieval Approach Using Ontology Information Hiding
por: Guo, Kehua, et al.
Publicado: (2013)

Operationalizing Semantic Medline for meeting the information needs at point of care
por: Rastegar-Mojarad, Majid, et al.
Publicado: (2015)

Variation ontology: annotator guide
por: Vihinen, Mauno
Publicado: (2014)

Sequence Ontology Annotation Guide
por: Eilbeck, Karen, et al.
Publicado: (2004)

Annotating the human genome with Disease Ontology
por: Osborne, John D, et al.
Publicado: (2009)

The GOA database: Gene Ontology annotation updates for 2015
por: Huntley, Rachael P., et al.
Publicado: (2014)

Term Matrix: a novel Gene Ontology annotation quality control system based on ontology term co-annotation patterns
por: Wood, Valerie, et al.
Publicado: (2020)

Gene Ontology annotation quality analysis in model eukaryotes
por: Buza, Teresia J., et al.
Publicado: (2008)

Amplification of the Gene Ontology annotation of Affymetrix probe sets
por: Muro, Enrique M, et al.
Publicado: (2006)

FlyBase: enhancing Drosophila Gene Ontology annotations
por: Tweedie, Susan, et al.
Publicado: (2009)

Automated Ontological Gene Annotation for Computing Disease Similarity
por: Mathur, Sachin, et al.
Publicado: (2010)

Evaluating Functional Annotations of Enzymes Using the Gene Ontology
por: Holliday, Gemma L., et al.
Publicado: (2017)

A robust data-driven approach for gene ontology annotation
por: Li, Yanpeng, et al.
Publicado: (2014)

FGSI: distant supervision for relation extraction method based on fine-grained semantic information
por: Sun, Chenghong, et al.
Publicado: (2023)

YOGY: a web-based, integrated database to retrieve protein orthologs and associated Gene Ontology terms
por: Penkett, Christopher J., et al.
Publicado: (2006)

BOWiki: an ontology-based wiki for annotation of data and integration of knowledge in biology
por: Hoehndorf, Robert, et al.
Publicado: (2009)

Cannot write session to /tmp/vufind_sessions/sess_8m0uaj9f6o3mm86sh5lkjp1ios