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Solvent Isotope Effects on Alkane Formation by Cyanobacterial Aldehyde Deformylating Oxygenase and Their Mechanistic Implications
[Image: see text] The reaction catalyzed by cyanobacterial aldehyde deformylating oxygenase is of interest both because of its potential application to the production of biofuels and because of the highly unusual nature of the deformylation reaction it catalyzes. Whereas the proton in the product al...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4151702/ https://www.ncbi.nlm.nih.gov/pubmed/25142631 http://dx.doi.org/10.1021/bi5005766 |
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author | Waugh, Matthew W. Marsh, E. Neil G. |
author_facet | Waugh, Matthew W. Marsh, E. Neil G. |
author_sort | Waugh, Matthew W. |
collection | PubMed |
description | [Image: see text] The reaction catalyzed by cyanobacterial aldehyde deformylating oxygenase is of interest both because of its potential application to the production of biofuels and because of the highly unusual nature of the deformylation reaction it catalyzes. Whereas the proton in the product alkane derives ultimately from the solvent, the identity of the proton donor in the active site remains unclear. To investigate the proton transfer step, solvent isotope effect (SIE) studies were undertaken. The rate of alkane formation was found to be maximal at pH 6.8 and to be the same in D(2)O or H(2)O within experimental error, implying that proton transfer is not a kinetically significant step. However, when the ratio of protium to deuterium in the product alkane was measured as a function of the mole fraction of D(2)O, a (D(2)O)SIE(obs) of 2.19 ± 0.02 was observed. The SIE was invariant with the mole fraction of D(2)O, indicating the involvement of a single protic site in the reaction. We interpret this SIE as most likely arising from a reactant state equilibrium isotope effect on a proton donor with an inverse fractionation factor, for which Φ = 0.45. These observations are consistent with an iron-bound water molecule being the proton donor to the alkane in the reaction. |
format | Online Article Text |
id | pubmed-4151702 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-41517022015-08-21 Solvent Isotope Effects on Alkane Formation by Cyanobacterial Aldehyde Deformylating Oxygenase and Their Mechanistic Implications Waugh, Matthew W. Marsh, E. Neil G. Biochemistry [Image: see text] The reaction catalyzed by cyanobacterial aldehyde deformylating oxygenase is of interest both because of its potential application to the production of biofuels and because of the highly unusual nature of the deformylation reaction it catalyzes. Whereas the proton in the product alkane derives ultimately from the solvent, the identity of the proton donor in the active site remains unclear. To investigate the proton transfer step, solvent isotope effect (SIE) studies were undertaken. The rate of alkane formation was found to be maximal at pH 6.8 and to be the same in D(2)O or H(2)O within experimental error, implying that proton transfer is not a kinetically significant step. However, when the ratio of protium to deuterium in the product alkane was measured as a function of the mole fraction of D(2)O, a (D(2)O)SIE(obs) of 2.19 ± 0.02 was observed. The SIE was invariant with the mole fraction of D(2)O, indicating the involvement of a single protic site in the reaction. We interpret this SIE as most likely arising from a reactant state equilibrium isotope effect on a proton donor with an inverse fractionation factor, for which Φ = 0.45. These observations are consistent with an iron-bound water molecule being the proton donor to the alkane in the reaction. American Chemical Society 2014-08-21 2014-09-02 /pmc/articles/PMC4151702/ /pubmed/25142631 http://dx.doi.org/10.1021/bi5005766 Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) |
spellingShingle | Waugh, Matthew W. Marsh, E. Neil G. Solvent Isotope Effects on Alkane Formation by Cyanobacterial Aldehyde Deformylating Oxygenase and Their Mechanistic Implications |
title | Solvent Isotope Effects on Alkane Formation by Cyanobacterial
Aldehyde Deformylating Oxygenase and Their Mechanistic Implications |
title_full | Solvent Isotope Effects on Alkane Formation by Cyanobacterial
Aldehyde Deformylating Oxygenase and Their Mechanistic Implications |
title_fullStr | Solvent Isotope Effects on Alkane Formation by Cyanobacterial
Aldehyde Deformylating Oxygenase and Their Mechanistic Implications |
title_full_unstemmed | Solvent Isotope Effects on Alkane Formation by Cyanobacterial
Aldehyde Deformylating Oxygenase and Their Mechanistic Implications |
title_short | Solvent Isotope Effects on Alkane Formation by Cyanobacterial
Aldehyde Deformylating Oxygenase and Their Mechanistic Implications |
title_sort | solvent isotope effects on alkane formation by cyanobacterial
aldehyde deformylating oxygenase and their mechanistic implications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4151702/ https://www.ncbi.nlm.nih.gov/pubmed/25142631 http://dx.doi.org/10.1021/bi5005766 |
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