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Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants

In order to provide useful genomic information for agronomical plants, we have established a database, the Kazusa Marker DataBase (http://marker.kazusa.or.jp). This database includes information on DNA markers, e.g., SSR and SNP markers, genetic linkage maps, and physical maps, that were developed a...

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Autores principales: Shirasawa, Kenta, Isobe, Sachiko, Tabata, Satoshi, Hirakawa, Hideki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Japanese Society of Breeding 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4154615/
https://www.ncbi.nlm.nih.gov/pubmed/25320561
http://dx.doi.org/10.1270/jsbbs.64.264
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author Shirasawa, Kenta
Isobe, Sachiko
Tabata, Satoshi
Hirakawa, Hideki
author_facet Shirasawa, Kenta
Isobe, Sachiko
Tabata, Satoshi
Hirakawa, Hideki
author_sort Shirasawa, Kenta
collection PubMed
description In order to provide useful genomic information for agronomical plants, we have established a database, the Kazusa Marker DataBase (http://marker.kazusa.or.jp). This database includes information on DNA markers, e.g., SSR and SNP markers, genetic linkage maps, and physical maps, that were developed at the Kazusa DNA Research Institute. Keyword searches for the markers, sequence data used for marker development, and experimental conditions are also available through this database. Currently, 10 plant species have been targeted: tomato (Solanum lycopersicum), pepper (Capsicum annuum), strawberry (Fragaria × ananassa), radish (Raphanus sativus), Lotus japonicus, soybean (Glycine max), peanut (Arachis hypogaea), red clover (Trifolium pratense), white clover (Trifolium repens), and eucalyptus (Eucalyptus camaldulensis). In addition, the number of plant species registered in this database will be increased as our research progresses. The Kazusa Marker DataBase will be a useful tool for both basic and applied sciences, such as genomics, genetics, and molecular breeding in crops.
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spelling pubmed-41546152014-10-15 Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants Shirasawa, Kenta Isobe, Sachiko Tabata, Satoshi Hirakawa, Hideki Breed Sci Note In order to provide useful genomic information for agronomical plants, we have established a database, the Kazusa Marker DataBase (http://marker.kazusa.or.jp). This database includes information on DNA markers, e.g., SSR and SNP markers, genetic linkage maps, and physical maps, that were developed at the Kazusa DNA Research Institute. Keyword searches for the markers, sequence data used for marker development, and experimental conditions are also available through this database. Currently, 10 plant species have been targeted: tomato (Solanum lycopersicum), pepper (Capsicum annuum), strawberry (Fragaria × ananassa), radish (Raphanus sativus), Lotus japonicus, soybean (Glycine max), peanut (Arachis hypogaea), red clover (Trifolium pratense), white clover (Trifolium repens), and eucalyptus (Eucalyptus camaldulensis). In addition, the number of plant species registered in this database will be increased as our research progresses. The Kazusa Marker DataBase will be a useful tool for both basic and applied sciences, such as genomics, genetics, and molecular breeding in crops. Japanese Society of Breeding 2014-09 2014-09-01 /pmc/articles/PMC4154615/ /pubmed/25320561 http://dx.doi.org/10.1270/jsbbs.64.264 Text en Copyright © 2014 by JAPANESE SOCIETY OF BREEDING http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Note
Shirasawa, Kenta
Isobe, Sachiko
Tabata, Satoshi
Hirakawa, Hideki
Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants
title Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants
title_full Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants
title_fullStr Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants
title_full_unstemmed Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants
title_short Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants
title_sort kazusa marker database: a database for genomics, genetics, and molecular breeding in plants
topic Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4154615/
https://www.ncbi.nlm.nih.gov/pubmed/25320561
http://dx.doi.org/10.1270/jsbbs.64.264
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