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Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages
Since we still know very little about stem cells in their natural environment, it is useful to explore their dynamics through modelling and simulation, as well as experimentally. Most models of stem cell systems are based on deterministic differential equations that ignore the natural heterogeneity...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4154659/ https://www.ncbi.nlm.nih.gov/pubmed/25188267 http://dx.doi.org/10.1371/journal.pcbi.1003794 |
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author | Székely, Tamás Burrage, Kevin Mangel, Marc Bonsall, Michael B. |
author_facet | Székely, Tamás Burrage, Kevin Mangel, Marc Bonsall, Michael B. |
author_sort | Székely, Tamás |
collection | PubMed |
description | Since we still know very little about stem cells in their natural environment, it is useful to explore their dynamics through modelling and simulation, as well as experimentally. Most models of stem cell systems are based on deterministic differential equations that ignore the natural heterogeneity of stem cell populations. This is not appropriate at the level of individual cells and niches, when randomness is more likely to affect dynamics. In this paper, we introduce a fast stochastic method for simulating a metapopulation of stem cell niche lineages, that is, many sub-populations that together form a heterogeneous metapopulation, over time. By selecting the common limiting timestep, our method ensures that the entire metapopulation is simulated synchronously. This is important, as it allows us to introduce interactions between separate niche lineages, which would otherwise be impossible. We expand our method to enable the coupling of many lineages into niche groups, where differentiated cells are pooled within each niche group. Using this method, we explore the dynamics of the haematopoietic system from a demand control system perspective. We find that coupling together niche lineages allows the organism to regulate blood cell numbers as closely as possible to the homeostatic optimum. Furthermore, coupled lineages respond better than uncoupled ones to random perturbations, here the loss of some myeloid cells. This could imply that it is advantageous for an organism to connect together its niche lineages into groups. Our results suggest that a potential fruitful empirical direction will be to understand how stem cell descendants communicate with the niche and how cancer may arise as a result of a failure of such communication. |
format | Online Article Text |
id | pubmed-4154659 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-41546592014-09-08 Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages Székely, Tamás Burrage, Kevin Mangel, Marc Bonsall, Michael B. PLoS Comput Biol Research Article Since we still know very little about stem cells in their natural environment, it is useful to explore their dynamics through modelling and simulation, as well as experimentally. Most models of stem cell systems are based on deterministic differential equations that ignore the natural heterogeneity of stem cell populations. This is not appropriate at the level of individual cells and niches, when randomness is more likely to affect dynamics. In this paper, we introduce a fast stochastic method for simulating a metapopulation of stem cell niche lineages, that is, many sub-populations that together form a heterogeneous metapopulation, over time. By selecting the common limiting timestep, our method ensures that the entire metapopulation is simulated synchronously. This is important, as it allows us to introduce interactions between separate niche lineages, which would otherwise be impossible. We expand our method to enable the coupling of many lineages into niche groups, where differentiated cells are pooled within each niche group. Using this method, we explore the dynamics of the haematopoietic system from a demand control system perspective. We find that coupling together niche lineages allows the organism to regulate blood cell numbers as closely as possible to the homeostatic optimum. Furthermore, coupled lineages respond better than uncoupled ones to random perturbations, here the loss of some myeloid cells. This could imply that it is advantageous for an organism to connect together its niche lineages into groups. Our results suggest that a potential fruitful empirical direction will be to understand how stem cell descendants communicate with the niche and how cancer may arise as a result of a failure of such communication. Public Library of Science 2014-09-04 /pmc/articles/PMC4154659/ /pubmed/25188267 http://dx.doi.org/10.1371/journal.pcbi.1003794 Text en © 2014 Székely et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Székely, Tamás Burrage, Kevin Mangel, Marc Bonsall, Michael B. Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages |
title | Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages |
title_full | Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages |
title_fullStr | Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages |
title_full_unstemmed | Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages |
title_short | Stochastic Dynamics of Interacting Haematopoietic Stem Cell Niche Lineages |
title_sort | stochastic dynamics of interacting haematopoietic stem cell niche lineages |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4154659/ https://www.ncbi.nlm.nih.gov/pubmed/25188267 http://dx.doi.org/10.1371/journal.pcbi.1003794 |
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