Cargando…

Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning

[Image: see text] Using a set of six (1)H-detected triple-resonance NMR experiments, we establish a method for sequence-specific backbone resonance assignment of magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectra of 5–30 kDa proteins. The approach relies on perdeuteration, amide (2)...

Descripción completa

Detalles Bibliográficos
Autores principales: Barbet-Massin, Emeline, Pell, Andrew J., Retel, Joren S., Andreas, Loren B., Jaudzems, Kristaps, Franks, W. Trent, Nieuwkoop, Andrew J., Hiller, Matthias, Higman, Victoria, Guerry, Paul, Bertarello, Andrea, Knight, Michael J., Felletti, Michele, Le Marchand, Tanguy, Kotelovica, Svetlana, Akopjana, Inara, Tars, Kaspars, Stoppini, Monica, Bellotti, Vittorio, Bolognesi, Martino, Ricagno, Stefano, Chou, James J., Griffin, Robert G., Oschkinat, Hartmut, Lesage, Anne, Emsley, Lyndon, Herrmann, Torsten, Pintacuda, Guido
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2014
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4156866/
https://www.ncbi.nlm.nih.gov/pubmed/25102442
http://dx.doi.org/10.1021/ja507382j
_version_ 1782333793722433536
author Barbet-Massin, Emeline
Pell, Andrew J.
Retel, Joren S.
Andreas, Loren B.
Jaudzems, Kristaps
Franks, W. Trent
Nieuwkoop, Andrew J.
Hiller, Matthias
Higman, Victoria
Guerry, Paul
Bertarello, Andrea
Knight, Michael J.
Felletti, Michele
Le Marchand, Tanguy
Kotelovica, Svetlana
Akopjana, Inara
Tars, Kaspars
Stoppini, Monica
Bellotti, Vittorio
Bolognesi, Martino
Ricagno, Stefano
Chou, James J.
Griffin, Robert G.
Oschkinat, Hartmut
Lesage, Anne
Emsley, Lyndon
Herrmann, Torsten
Pintacuda, Guido
author_facet Barbet-Massin, Emeline
Pell, Andrew J.
Retel, Joren S.
Andreas, Loren B.
Jaudzems, Kristaps
Franks, W. Trent
Nieuwkoop, Andrew J.
Hiller, Matthias
Higman, Victoria
Guerry, Paul
Bertarello, Andrea
Knight, Michael J.
Felletti, Michele
Le Marchand, Tanguy
Kotelovica, Svetlana
Akopjana, Inara
Tars, Kaspars
Stoppini, Monica
Bellotti, Vittorio
Bolognesi, Martino
Ricagno, Stefano
Chou, James J.
Griffin, Robert G.
Oschkinat, Hartmut
Lesage, Anne
Emsley, Lyndon
Herrmann, Torsten
Pintacuda, Guido
author_sort Barbet-Massin, Emeline
collection PubMed
description [Image: see text] Using a set of six (1)H-detected triple-resonance NMR experiments, we establish a method for sequence-specific backbone resonance assignment of magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectra of 5–30 kDa proteins. The approach relies on perdeuteration, amide (2)H/(1)H exchange, high magnetic fields, and high-spinning frequencies (ω(r)/2π ≥ 60 kHz) and yields high-quality NMR data, enabling the use of automated analysis. The method is validated with five examples of proteins in different condensed states, including two microcrystalline proteins, a sedimented virus capsid, and two membrane-embedded systems. In comparison to contemporary (13)C/(15)N-based methods, this approach facilitates and accelerates the MAS NMR assignment process, shortening the spectral acquisition times and enabling the use of unsupervised state-of-the-art computational data analysis protocols originally developed for solution NMR.
format Online
Article
Text
id pubmed-4156866
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-41568662015-08-07 Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning Barbet-Massin, Emeline Pell, Andrew J. Retel, Joren S. Andreas, Loren B. Jaudzems, Kristaps Franks, W. Trent Nieuwkoop, Andrew J. Hiller, Matthias Higman, Victoria Guerry, Paul Bertarello, Andrea Knight, Michael J. Felletti, Michele Le Marchand, Tanguy Kotelovica, Svetlana Akopjana, Inara Tars, Kaspars Stoppini, Monica Bellotti, Vittorio Bolognesi, Martino Ricagno, Stefano Chou, James J. Griffin, Robert G. Oschkinat, Hartmut Lesage, Anne Emsley, Lyndon Herrmann, Torsten Pintacuda, Guido J Am Chem Soc [Image: see text] Using a set of six (1)H-detected triple-resonance NMR experiments, we establish a method for sequence-specific backbone resonance assignment of magic angle spinning (MAS) nuclear magnetic resonance (NMR) spectra of 5–30 kDa proteins. The approach relies on perdeuteration, amide (2)H/(1)H exchange, high magnetic fields, and high-spinning frequencies (ω(r)/2π ≥ 60 kHz) and yields high-quality NMR data, enabling the use of automated analysis. The method is validated with five examples of proteins in different condensed states, including two microcrystalline proteins, a sedimented virus capsid, and two membrane-embedded systems. In comparison to contemporary (13)C/(15)N-based methods, this approach facilitates and accelerates the MAS NMR assignment process, shortening the spectral acquisition times and enabling the use of unsupervised state-of-the-art computational data analysis protocols originally developed for solution NMR. American Chemical Society 2014-08-07 2014-09-03 /pmc/articles/PMC4156866/ /pubmed/25102442 http://dx.doi.org/10.1021/ja507382j Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html)
spellingShingle Barbet-Massin, Emeline
Pell, Andrew J.
Retel, Joren S.
Andreas, Loren B.
Jaudzems, Kristaps
Franks, W. Trent
Nieuwkoop, Andrew J.
Hiller, Matthias
Higman, Victoria
Guerry, Paul
Bertarello, Andrea
Knight, Michael J.
Felletti, Michele
Le Marchand, Tanguy
Kotelovica, Svetlana
Akopjana, Inara
Tars, Kaspars
Stoppini, Monica
Bellotti, Vittorio
Bolognesi, Martino
Ricagno, Stefano
Chou, James J.
Griffin, Robert G.
Oschkinat, Hartmut
Lesage, Anne
Emsley, Lyndon
Herrmann, Torsten
Pintacuda, Guido
Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning
title Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning
title_full Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning
title_fullStr Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning
title_full_unstemmed Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning
title_short Rapid Proton-Detected NMR Assignment for Proteins with Fast Magic Angle Spinning
title_sort rapid proton-detected nmr assignment for proteins with fast magic angle spinning
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4156866/
https://www.ncbi.nlm.nih.gov/pubmed/25102442
http://dx.doi.org/10.1021/ja507382j
work_keys_str_mv AT barbetmassinemeline rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT pellandrewj rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT reteljorens rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT andreaslorenb rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT jaudzemskristaps rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT frankswtrent rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT nieuwkoopandrewj rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT hillermatthias rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT higmanvictoria rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT guerrypaul rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT bertarelloandrea rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT knightmichaelj rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT fellettimichele rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT lemarchandtanguy rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT kotelovicasvetlana rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT akopjanainara rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT tarskaspars rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT stoppinimonica rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT bellottivittorio rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT bolognesimartino rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT ricagnostefano rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT choujamesj rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT griffinrobertg rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT oschkinathartmut rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT lesageanne rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT emsleylyndon rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT herrmanntorsten rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning
AT pintacudaguido rapidprotondetectednmrassignmentforproteinswithfastmagicanglespinning