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Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway

Cancer is a serious disease that causes many deaths every year. We urgently need to design effective treatments to cure this disease. Tumor suppressor genes (TSGs) are a type of gene that can protect cells from becoming cancerous. In view of this, correct identification of TSGs is an alternative met...

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Detalles Bibliográficos
Autores principales: Yang, Jing, Chen, Lei, Kong, Xiangyin, Huang, Tao, Cai, Yu-Dong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160198/
https://www.ncbi.nlm.nih.gov/pubmed/25207935
http://dx.doi.org/10.1371/journal.pone.0107202
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author Yang, Jing
Chen, Lei
Kong, Xiangyin
Huang, Tao
Cai, Yu-Dong
author_facet Yang, Jing
Chen, Lei
Kong, Xiangyin
Huang, Tao
Cai, Yu-Dong
author_sort Yang, Jing
collection PubMed
description Cancer is a serious disease that causes many deaths every year. We urgently need to design effective treatments to cure this disease. Tumor suppressor genes (TSGs) are a type of gene that can protect cells from becoming cancerous. In view of this, correct identification of TSGs is an alternative method for identifying effective cancer therapies. In this study, we performed gene ontology (GO) and pathway enrichment analysis of the TSGs and non-TSGs. Some popular feature selection methods, including minimum redundancy maximum relevance (mRMR) and incremental feature selection (IFS), were employed to analyze the enrichment features. Accordingly, some GO terms and KEGG pathways, such as biological adhesion, cell cycle control, genomic stability maintenance and cell death regulation, were extracted, which are important factors for identifying TSGs. We hope these findings can help in building effective prediction methods for identifying TSGs and thereby, promoting the discovery of effective cancer treatments.
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spelling pubmed-41601982014-09-12 Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway Yang, Jing Chen, Lei Kong, Xiangyin Huang, Tao Cai, Yu-Dong PLoS One Research Article Cancer is a serious disease that causes many deaths every year. We urgently need to design effective treatments to cure this disease. Tumor suppressor genes (TSGs) are a type of gene that can protect cells from becoming cancerous. In view of this, correct identification of TSGs is an alternative method for identifying effective cancer therapies. In this study, we performed gene ontology (GO) and pathway enrichment analysis of the TSGs and non-TSGs. Some popular feature selection methods, including minimum redundancy maximum relevance (mRMR) and incremental feature selection (IFS), were employed to analyze the enrichment features. Accordingly, some GO terms and KEGG pathways, such as biological adhesion, cell cycle control, genomic stability maintenance and cell death regulation, were extracted, which are important factors for identifying TSGs. We hope these findings can help in building effective prediction methods for identifying TSGs and thereby, promoting the discovery of effective cancer treatments. Public Library of Science 2014-09-10 /pmc/articles/PMC4160198/ /pubmed/25207935 http://dx.doi.org/10.1371/journal.pone.0107202 Text en © 2014 Yang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Yang, Jing
Chen, Lei
Kong, Xiangyin
Huang, Tao
Cai, Yu-Dong
Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway
title Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway
title_full Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway
title_fullStr Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway
title_full_unstemmed Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway
title_short Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway
title_sort analysis of tumor suppressor genes based on gene ontology and the kegg pathway
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160198/
https://www.ncbi.nlm.nih.gov/pubmed/25207935
http://dx.doi.org/10.1371/journal.pone.0107202
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