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Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway
Cancer is a serious disease that causes many deaths every year. We urgently need to design effective treatments to cure this disease. Tumor suppressor genes (TSGs) are a type of gene that can protect cells from becoming cancerous. In view of this, correct identification of TSGs is an alternative met...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160198/ https://www.ncbi.nlm.nih.gov/pubmed/25207935 http://dx.doi.org/10.1371/journal.pone.0107202 |
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author | Yang, Jing Chen, Lei Kong, Xiangyin Huang, Tao Cai, Yu-Dong |
author_facet | Yang, Jing Chen, Lei Kong, Xiangyin Huang, Tao Cai, Yu-Dong |
author_sort | Yang, Jing |
collection | PubMed |
description | Cancer is a serious disease that causes many deaths every year. We urgently need to design effective treatments to cure this disease. Tumor suppressor genes (TSGs) are a type of gene that can protect cells from becoming cancerous. In view of this, correct identification of TSGs is an alternative method for identifying effective cancer therapies. In this study, we performed gene ontology (GO) and pathway enrichment analysis of the TSGs and non-TSGs. Some popular feature selection methods, including minimum redundancy maximum relevance (mRMR) and incremental feature selection (IFS), were employed to analyze the enrichment features. Accordingly, some GO terms and KEGG pathways, such as biological adhesion, cell cycle control, genomic stability maintenance and cell death regulation, were extracted, which are important factors for identifying TSGs. We hope these findings can help in building effective prediction methods for identifying TSGs and thereby, promoting the discovery of effective cancer treatments. |
format | Online Article Text |
id | pubmed-4160198 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-41601982014-09-12 Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway Yang, Jing Chen, Lei Kong, Xiangyin Huang, Tao Cai, Yu-Dong PLoS One Research Article Cancer is a serious disease that causes many deaths every year. We urgently need to design effective treatments to cure this disease. Tumor suppressor genes (TSGs) are a type of gene that can protect cells from becoming cancerous. In view of this, correct identification of TSGs is an alternative method for identifying effective cancer therapies. In this study, we performed gene ontology (GO) and pathway enrichment analysis of the TSGs and non-TSGs. Some popular feature selection methods, including minimum redundancy maximum relevance (mRMR) and incremental feature selection (IFS), were employed to analyze the enrichment features. Accordingly, some GO terms and KEGG pathways, such as biological adhesion, cell cycle control, genomic stability maintenance and cell death regulation, were extracted, which are important factors for identifying TSGs. We hope these findings can help in building effective prediction methods for identifying TSGs and thereby, promoting the discovery of effective cancer treatments. Public Library of Science 2014-09-10 /pmc/articles/PMC4160198/ /pubmed/25207935 http://dx.doi.org/10.1371/journal.pone.0107202 Text en © 2014 Yang et al http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Yang, Jing Chen, Lei Kong, Xiangyin Huang, Tao Cai, Yu-Dong Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway |
title | Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway |
title_full | Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway |
title_fullStr | Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway |
title_full_unstemmed | Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway |
title_short | Analysis of Tumor Suppressor Genes Based on Gene Ontology and the KEGG Pathway |
title_sort | analysis of tumor suppressor genes based on gene ontology and the kegg pathway |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160198/ https://www.ncbi.nlm.nih.gov/pubmed/25207935 http://dx.doi.org/10.1371/journal.pone.0107202 |
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