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Integrated Analysis for Identifying Radix Astragali and Its Adulterants Based on DNA Barcoding
Radix Astragali is a popular herb used in traditional Chinese medicine for its proimmune and antidiabetic properties. However, methods are needed to help distinguish Radix Astragali from its varied adulterants. DNA barcoding is a widely applicable molecular method used to identify medicinal plants....
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi Publishing Corporation
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160622/ https://www.ncbi.nlm.nih.gov/pubmed/25246939 http://dx.doi.org/10.1155/2014/843923 |
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author | Zheng, Sihao Liu, Dewang Ren, Weiguang Fu, Juan Huang, Linfang Chen, Shilin |
author_facet | Zheng, Sihao Liu, Dewang Ren, Weiguang Fu, Juan Huang, Linfang Chen, Shilin |
author_sort | Zheng, Sihao |
collection | PubMed |
description | Radix Astragali is a popular herb used in traditional Chinese medicine for its proimmune and antidiabetic properties. However, methods are needed to help distinguish Radix Astragali from its varied adulterants. DNA barcoding is a widely applicable molecular method used to identify medicinal plants. Yet, its use has been hampered by genetic distance, base variation, and limitations of the bio-NJ tree. Herein, we report the validation of an integrated analysis method for plant species identification using DNA barcoding that focuses on genetic distance, identification efficiency, inter- and intraspecific variation, and barcoding gap. We collected 478 sequences from six candidate DNA barcodes (ITS2, ITS, psbA-trnH, rbcL, matK, and COI) from 29 species of Radix Astragali and adulterants. The internal transcribed spacer (ITS) sequence was demonstrated as the optimal barcode for identifying Radix Astragali and its adulterants. This new analysis method is helpful in identifying Radix Astragali and expedites the utilization and data mining of DNA barcoding. |
format | Online Article Text |
id | pubmed-4160622 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Hindawi Publishing Corporation |
record_format | MEDLINE/PubMed |
spelling | pubmed-41606222014-09-22 Integrated Analysis for Identifying Radix Astragali and Its Adulterants Based on DNA Barcoding Zheng, Sihao Liu, Dewang Ren, Weiguang Fu, Juan Huang, Linfang Chen, Shilin Evid Based Complement Alternat Med Research Article Radix Astragali is a popular herb used in traditional Chinese medicine for its proimmune and antidiabetic properties. However, methods are needed to help distinguish Radix Astragali from its varied adulterants. DNA barcoding is a widely applicable molecular method used to identify medicinal plants. Yet, its use has been hampered by genetic distance, base variation, and limitations of the bio-NJ tree. Herein, we report the validation of an integrated analysis method for plant species identification using DNA barcoding that focuses on genetic distance, identification efficiency, inter- and intraspecific variation, and barcoding gap. We collected 478 sequences from six candidate DNA barcodes (ITS2, ITS, psbA-trnH, rbcL, matK, and COI) from 29 species of Radix Astragali and adulterants. The internal transcribed spacer (ITS) sequence was demonstrated as the optimal barcode for identifying Radix Astragali and its adulterants. This new analysis method is helpful in identifying Radix Astragali and expedites the utilization and data mining of DNA barcoding. Hindawi Publishing Corporation 2014 2014-08-27 /pmc/articles/PMC4160622/ /pubmed/25246939 http://dx.doi.org/10.1155/2014/843923 Text en Copyright © 2014 Sihao Zheng et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Zheng, Sihao Liu, Dewang Ren, Weiguang Fu, Juan Huang, Linfang Chen, Shilin Integrated Analysis for Identifying Radix Astragali and Its Adulterants Based on DNA Barcoding |
title | Integrated Analysis for Identifying Radix Astragali and Its Adulterants Based on DNA Barcoding |
title_full | Integrated Analysis for Identifying Radix Astragali and Its Adulterants Based on DNA Barcoding |
title_fullStr | Integrated Analysis for Identifying Radix Astragali and Its Adulterants Based on DNA Barcoding |
title_full_unstemmed | Integrated Analysis for Identifying Radix Astragali and Its Adulterants Based on DNA Barcoding |
title_short | Integrated Analysis for Identifying Radix Astragali and Its Adulterants Based on DNA Barcoding |
title_sort | integrated analysis for identifying radix astragali and its adulterants based on dna barcoding |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4160622/ https://www.ncbi.nlm.nih.gov/pubmed/25246939 http://dx.doi.org/10.1155/2014/843923 |
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