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Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method

The differences in demographic and life-history processes between organisms living in the same population have important consequences for ecological and evolutionary dynamics. Modern statistical and computational methods allow the investigation of individual and shared (among homogeneous groups) det...

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Autores principales: Vincenzi, Simone, Mangel, Marc, Crivelli, Alain J., Munch, Stephan, Skaug, Hans J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161297/
https://www.ncbi.nlm.nih.gov/pubmed/25211603
http://dx.doi.org/10.1371/journal.pcbi.1003828
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author Vincenzi, Simone
Mangel, Marc
Crivelli, Alain J.
Munch, Stephan
Skaug, Hans J.
author_facet Vincenzi, Simone
Mangel, Marc
Crivelli, Alain J.
Munch, Stephan
Skaug, Hans J.
author_sort Vincenzi, Simone
collection PubMed
description The differences in demographic and life-history processes between organisms living in the same population have important consequences for ecological and evolutionary dynamics. Modern statistical and computational methods allow the investigation of individual and shared (among homogeneous groups) determinants of the observed variation in growth. We use an Empirical Bayes approach to estimate individual and shared variation in somatic growth using a von Bertalanffy growth model with random effects. To illustrate the power and generality of the method, we consider two populations of marble trout Salmo marmoratus living in Slovenian streams, where individually tagged fish have been sampled for more than 15 years. We use year-of-birth cohort, population density during the first year of life, and individual random effects as potential predictors of the von Bertalanffy growth function's parameters k (rate of growth) and [Image: see text] (asymptotic size). Our results showed that size ranks were largely maintained throughout marble trout lifetime in both populations. According to the Akaike Information Criterion (AIC), the best models showed different growth patterns for year-of-birth cohorts as well as the existence of substantial individual variation in growth trajectories after accounting for the cohort effect. For both populations, models including density during the first year of life showed that growth tended to decrease with increasing population density early in life. Model validation showed that predictions of individual growth trajectories using the random-effects model were more accurate than predictions based on mean size-at-age of fish.
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spelling pubmed-41612972014-09-17 Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method Vincenzi, Simone Mangel, Marc Crivelli, Alain J. Munch, Stephan Skaug, Hans J. PLoS Comput Biol Research Article The differences in demographic and life-history processes between organisms living in the same population have important consequences for ecological and evolutionary dynamics. Modern statistical and computational methods allow the investigation of individual and shared (among homogeneous groups) determinants of the observed variation in growth. We use an Empirical Bayes approach to estimate individual and shared variation in somatic growth using a von Bertalanffy growth model with random effects. To illustrate the power and generality of the method, we consider two populations of marble trout Salmo marmoratus living in Slovenian streams, where individually tagged fish have been sampled for more than 15 years. We use year-of-birth cohort, population density during the first year of life, and individual random effects as potential predictors of the von Bertalanffy growth function's parameters k (rate of growth) and [Image: see text] (asymptotic size). Our results showed that size ranks were largely maintained throughout marble trout lifetime in both populations. According to the Akaike Information Criterion (AIC), the best models showed different growth patterns for year-of-birth cohorts as well as the existence of substantial individual variation in growth trajectories after accounting for the cohort effect. For both populations, models including density during the first year of life showed that growth tended to decrease with increasing population density early in life. Model validation showed that predictions of individual growth trajectories using the random-effects model were more accurate than predictions based on mean size-at-age of fish. Public Library of Science 2014-09-11 /pmc/articles/PMC4161297/ /pubmed/25211603 http://dx.doi.org/10.1371/journal.pcbi.1003828 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose.
spellingShingle Research Article
Vincenzi, Simone
Mangel, Marc
Crivelli, Alain J.
Munch, Stephan
Skaug, Hans J.
Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method
title Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method
title_full Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method
title_fullStr Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method
title_full_unstemmed Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method
title_short Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method
title_sort determining individual variation in growth and its implication for life-history and population processes using the empirical bayes method
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161297/
https://www.ncbi.nlm.nih.gov/pubmed/25211603
http://dx.doi.org/10.1371/journal.pcbi.1003828
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