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Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method
The differences in demographic and life-history processes between organisms living in the same population have important consequences for ecological and evolutionary dynamics. Modern statistical and computational methods allow the investigation of individual and shared (among homogeneous groups) det...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161297/ https://www.ncbi.nlm.nih.gov/pubmed/25211603 http://dx.doi.org/10.1371/journal.pcbi.1003828 |
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author | Vincenzi, Simone Mangel, Marc Crivelli, Alain J. Munch, Stephan Skaug, Hans J. |
author_facet | Vincenzi, Simone Mangel, Marc Crivelli, Alain J. Munch, Stephan Skaug, Hans J. |
author_sort | Vincenzi, Simone |
collection | PubMed |
description | The differences in demographic and life-history processes between organisms living in the same population have important consequences for ecological and evolutionary dynamics. Modern statistical and computational methods allow the investigation of individual and shared (among homogeneous groups) determinants of the observed variation in growth. We use an Empirical Bayes approach to estimate individual and shared variation in somatic growth using a von Bertalanffy growth model with random effects. To illustrate the power and generality of the method, we consider two populations of marble trout Salmo marmoratus living in Slovenian streams, where individually tagged fish have been sampled for more than 15 years. We use year-of-birth cohort, population density during the first year of life, and individual random effects as potential predictors of the von Bertalanffy growth function's parameters k (rate of growth) and [Image: see text] (asymptotic size). Our results showed that size ranks were largely maintained throughout marble trout lifetime in both populations. According to the Akaike Information Criterion (AIC), the best models showed different growth patterns for year-of-birth cohorts as well as the existence of substantial individual variation in growth trajectories after accounting for the cohort effect. For both populations, models including density during the first year of life showed that growth tended to decrease with increasing population density early in life. Model validation showed that predictions of individual growth trajectories using the random-effects model were more accurate than predictions based on mean size-at-age of fish. |
format | Online Article Text |
id | pubmed-4161297 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-41612972014-09-17 Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method Vincenzi, Simone Mangel, Marc Crivelli, Alain J. Munch, Stephan Skaug, Hans J. PLoS Comput Biol Research Article The differences in demographic and life-history processes between organisms living in the same population have important consequences for ecological and evolutionary dynamics. Modern statistical and computational methods allow the investigation of individual and shared (among homogeneous groups) determinants of the observed variation in growth. We use an Empirical Bayes approach to estimate individual and shared variation in somatic growth using a von Bertalanffy growth model with random effects. To illustrate the power and generality of the method, we consider two populations of marble trout Salmo marmoratus living in Slovenian streams, where individually tagged fish have been sampled for more than 15 years. We use year-of-birth cohort, population density during the first year of life, and individual random effects as potential predictors of the von Bertalanffy growth function's parameters k (rate of growth) and [Image: see text] (asymptotic size). Our results showed that size ranks were largely maintained throughout marble trout lifetime in both populations. According to the Akaike Information Criterion (AIC), the best models showed different growth patterns for year-of-birth cohorts as well as the existence of substantial individual variation in growth trajectories after accounting for the cohort effect. For both populations, models including density during the first year of life showed that growth tended to decrease with increasing population density early in life. Model validation showed that predictions of individual growth trajectories using the random-effects model were more accurate than predictions based on mean size-at-age of fish. Public Library of Science 2014-09-11 /pmc/articles/PMC4161297/ /pubmed/25211603 http://dx.doi.org/10.1371/journal.pcbi.1003828 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open-access article distributed under the terms of the Creative Commons Public Domain declaration, which stipulates that, once placed in the public domain, this work may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. |
spellingShingle | Research Article Vincenzi, Simone Mangel, Marc Crivelli, Alain J. Munch, Stephan Skaug, Hans J. Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method |
title | Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method |
title_full | Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method |
title_fullStr | Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method |
title_full_unstemmed | Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method |
title_short | Determining Individual Variation in Growth and Its Implication for Life-History and Population Processes Using the Empirical Bayes Method |
title_sort | determining individual variation in growth and its implication for life-history and population processes using the empirical bayes method |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4161297/ https://www.ncbi.nlm.nih.gov/pubmed/25211603 http://dx.doi.org/10.1371/journal.pcbi.1003828 |
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