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Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1)

• Premise of the study: Urbanization is one of the main factors contributing to loss of genetic diversity, as the resulting landscape fragmentation and habitat loss induce species isolation. However, studies of genetic structure and diversity in urbanized landscapes are still rare. We characterized...

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Autores principales: Bossu, Angèle, Bertaudière-Montès, Valérie, Dubut, Vincent, Manel, Stéphanie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162664/
https://www.ncbi.nlm.nih.gov/pubmed/25225626
http://dx.doi.org/10.3732/apps.1400036
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author Bossu, Angèle
Bertaudière-Montès, Valérie
Dubut, Vincent
Manel, Stéphanie
author_facet Bossu, Angèle
Bertaudière-Montès, Valérie
Dubut, Vincent
Manel, Stéphanie
author_sort Bossu, Angèle
collection PubMed
description • Premise of the study: Urbanization is one of the main factors contributing to loss of genetic diversity, as the resulting landscape fragmentation and habitat loss induce species isolation. However, studies of genetic structure and diversity in urbanized landscapes are still rare. We characterized microsatellite primers for Parietaria judaica to study this environment. • Methods and Results: Eleven microsatellite loci from P. judaica, an urban plant, were isolated using shotgun pyrosequencing, and the simple sequence repeat (SSR) markers were screened in 20 individuals of P. judaica. The loci were tested on 166 individuals from three populations in different cities. The number of alleles ranged from two to 19, and expected and observed heterozygosity values ranged from 0.019 to 0.912 and 0.019 to 0.448, respectively. • Conclusions: The markers amplified well in the species and will be useful for examining genetic diversity and population genetic structure in this urban plant.
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spelling pubmed-41626642014-09-15 Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1) Bossu, Angèle Bertaudière-Montès, Valérie Dubut, Vincent Manel, Stéphanie Appl Plant Sci Primer Note • Premise of the study: Urbanization is one of the main factors contributing to loss of genetic diversity, as the resulting landscape fragmentation and habitat loss induce species isolation. However, studies of genetic structure and diversity in urbanized landscapes are still rare. We characterized microsatellite primers for Parietaria judaica to study this environment. • Methods and Results: Eleven microsatellite loci from P. judaica, an urban plant, were isolated using shotgun pyrosequencing, and the simple sequence repeat (SSR) markers were screened in 20 individuals of P. judaica. The loci were tested on 166 individuals from three populations in different cities. The number of alleles ranged from two to 19, and expected and observed heterozygosity values ranged from 0.019 to 0.912 and 0.019 to 0.448, respectively. • Conclusions: The markers amplified well in the species and will be useful for examining genetic diversity and population genetic structure in this urban plant. Botanical Society of America 2014-09-09 /pmc/articles/PMC4162664/ /pubmed/25225626 http://dx.doi.org/10.3732/apps.1400036 Text en © 2014 Bossu et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
Bossu, Angèle
Bertaudière-Montès, Valérie
Dubut, Vincent
Manel, Stéphanie
Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1)
title Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1)
title_full Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1)
title_fullStr Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1)
title_full_unstemmed Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1)
title_short Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1)
title_sort microsatellite primers in parietaria judaica (urticaceae) to assess genetic diversity and structure in urban landscapes(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162664/
https://www.ncbi.nlm.nih.gov/pubmed/25225626
http://dx.doi.org/10.3732/apps.1400036
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