Cargando…
Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1)
• Premise of the study: Urbanization is one of the main factors contributing to loss of genetic diversity, as the resulting landscape fragmentation and habitat loss induce species isolation. However, studies of genetic structure and diversity in urbanized landscapes are still rare. We characterized...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162664/ https://www.ncbi.nlm.nih.gov/pubmed/25225626 http://dx.doi.org/10.3732/apps.1400036 |
_version_ | 1782334705192927232 |
---|---|
author | Bossu, Angèle Bertaudière-Montès, Valérie Dubut, Vincent Manel, Stéphanie |
author_facet | Bossu, Angèle Bertaudière-Montès, Valérie Dubut, Vincent Manel, Stéphanie |
author_sort | Bossu, Angèle |
collection | PubMed |
description | • Premise of the study: Urbanization is one of the main factors contributing to loss of genetic diversity, as the resulting landscape fragmentation and habitat loss induce species isolation. However, studies of genetic structure and diversity in urbanized landscapes are still rare. We characterized microsatellite primers for Parietaria judaica to study this environment. • Methods and Results: Eleven microsatellite loci from P. judaica, an urban plant, were isolated using shotgun pyrosequencing, and the simple sequence repeat (SSR) markers were screened in 20 individuals of P. judaica. The loci were tested on 166 individuals from three populations in different cities. The number of alleles ranged from two to 19, and expected and observed heterozygosity values ranged from 0.019 to 0.912 and 0.019 to 0.448, respectively. • Conclusions: The markers amplified well in the species and will be useful for examining genetic diversity and population genetic structure in this urban plant. |
format | Online Article Text |
id | pubmed-4162664 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41626642014-09-15 Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1) Bossu, Angèle Bertaudière-Montès, Valérie Dubut, Vincent Manel, Stéphanie Appl Plant Sci Primer Note • Premise of the study: Urbanization is one of the main factors contributing to loss of genetic diversity, as the resulting landscape fragmentation and habitat loss induce species isolation. However, studies of genetic structure and diversity in urbanized landscapes are still rare. We characterized microsatellite primers for Parietaria judaica to study this environment. • Methods and Results: Eleven microsatellite loci from P. judaica, an urban plant, were isolated using shotgun pyrosequencing, and the simple sequence repeat (SSR) markers were screened in 20 individuals of P. judaica. The loci were tested on 166 individuals from three populations in different cities. The number of alleles ranged from two to 19, and expected and observed heterozygosity values ranged from 0.019 to 0.912 and 0.019 to 0.448, respectively. • Conclusions: The markers amplified well in the species and will be useful for examining genetic diversity and population genetic structure in this urban plant. Botanical Society of America 2014-09-09 /pmc/articles/PMC4162664/ /pubmed/25225626 http://dx.doi.org/10.3732/apps.1400036 Text en © 2014 Bossu et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Bossu, Angèle Bertaudière-Montès, Valérie Dubut, Vincent Manel, Stéphanie Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1) |
title | Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1) |
title_full | Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1) |
title_fullStr | Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1) |
title_full_unstemmed | Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1) |
title_short | Microsatellite primers in Parietaria judaica (Urticaceae) to assess genetic diversity and structure in urban landscapes(1) |
title_sort | microsatellite primers in parietaria judaica (urticaceae) to assess genetic diversity and structure in urban landscapes(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162664/ https://www.ncbi.nlm.nih.gov/pubmed/25225626 http://dx.doi.org/10.3732/apps.1400036 |
work_keys_str_mv | AT bossuangele microsatelliteprimersinparietariajudaicaurticaceaetoassessgeneticdiversityandstructureinurbanlandscapes1 AT bertaudieremontesvalerie microsatelliteprimersinparietariajudaicaurticaceaetoassessgeneticdiversityandstructureinurbanlandscapes1 AT dubutvincent microsatelliteprimersinparietariajudaicaurticaceaetoassessgeneticdiversityandstructureinurbanlandscapes1 AT manelstephanie microsatelliteprimersinparietariajudaicaurticaceaetoassessgeneticdiversityandstructureinurbanlandscapes1 |