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Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1)

• Premise of the study: Nine polymorphic and 12 monomorphic microsatellite loci (simple sequence repeats [SSRs]) were isolated and characterized for the gynodioecious grassland perennial Saxifraga granulata. • Methods and Results: Based on genomic screening of leaf material of four individuals from...

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Autores principales: van der Meer, Sascha, Van Houdt, Jeroen K. J., Maes, Gregory E., Hellemans, Bart, Jacquemyn, Hans
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Botanical Society of America 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162666/
https://www.ncbi.nlm.nih.gov/pubmed/25225628
http://dx.doi.org/10.3732/apps.1400040
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author van der Meer, Sascha
Van Houdt, Jeroen K. J.
Maes, Gregory E.
Hellemans, Bart
Jacquemyn, Hans
author_facet van der Meer, Sascha
Van Houdt, Jeroen K. J.
Maes, Gregory E.
Hellemans, Bart
Jacquemyn, Hans
author_sort van der Meer, Sascha
collection PubMed
description • Premise of the study: Nine polymorphic and 12 monomorphic microsatellite loci (simple sequence repeats [SSRs]) were isolated and characterized for the gynodioecious grassland perennial Saxifraga granulata. • Methods and Results: Based on genomic screening of leaf material of four individuals from four populations, a total of 21 microsatellite primer pairs were designed for S. granulata. Nine loci were polymorphic and were optimized into two PCR multiplex reactions and tested on 100 individuals from five riparian populations from central Belgium. The number of alleles of the polymorphic loci ranged from three to 18, and gametic heterozygosity ranged from 0.26 to 0.94. • Conclusions: The markers that are presented here are the first microsatellite markers reported for S. granulata and will be used to assess how river systems shape the spatial genetic structure and diversity of riparian populations of this species.
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spelling pubmed-41626662014-09-15 Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1) van der Meer, Sascha Van Houdt, Jeroen K. J. Maes, Gregory E. Hellemans, Bart Jacquemyn, Hans Appl Plant Sci Primer Note • Premise of the study: Nine polymorphic and 12 monomorphic microsatellite loci (simple sequence repeats [SSRs]) were isolated and characterized for the gynodioecious grassland perennial Saxifraga granulata. • Methods and Results: Based on genomic screening of leaf material of four individuals from four populations, a total of 21 microsatellite primer pairs were designed for S. granulata. Nine loci were polymorphic and were optimized into two PCR multiplex reactions and tested on 100 individuals from five riparian populations from central Belgium. The number of alleles of the polymorphic loci ranged from three to 18, and gametic heterozygosity ranged from 0.26 to 0.94. • Conclusions: The markers that are presented here are the first microsatellite markers reported for S. granulata and will be used to assess how river systems shape the spatial genetic structure and diversity of riparian populations of this species. Botanical Society of America 2014-08-29 /pmc/articles/PMC4162666/ /pubmed/25225628 http://dx.doi.org/10.3732/apps.1400040 Text en © 2014 van der Meer et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA).
spellingShingle Primer Note
van der Meer, Sascha
Van Houdt, Jeroen K. J.
Maes, Gregory E.
Hellemans, Bart
Jacquemyn, Hans
Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1)
title Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1)
title_full Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1)
title_fullStr Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1)
title_full_unstemmed Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1)
title_short Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1)
title_sort microsatellite primers for the gynodioecious grassland perennial saxifraga granulata (saxifragaceae)(1)
topic Primer Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162666/
https://www.ncbi.nlm.nih.gov/pubmed/25225628
http://dx.doi.org/10.3732/apps.1400040
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