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Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1)
• Premise of the study: Nine polymorphic and 12 monomorphic microsatellite loci (simple sequence repeats [SSRs]) were isolated and characterized for the gynodioecious grassland perennial Saxifraga granulata. • Methods and Results: Based on genomic screening of leaf material of four individuals from...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162666/ https://www.ncbi.nlm.nih.gov/pubmed/25225628 http://dx.doi.org/10.3732/apps.1400040 |
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author | van der Meer, Sascha Van Houdt, Jeroen K. J. Maes, Gregory E. Hellemans, Bart Jacquemyn, Hans |
author_facet | van der Meer, Sascha Van Houdt, Jeroen K. J. Maes, Gregory E. Hellemans, Bart Jacquemyn, Hans |
author_sort | van der Meer, Sascha |
collection | PubMed |
description | • Premise of the study: Nine polymorphic and 12 monomorphic microsatellite loci (simple sequence repeats [SSRs]) were isolated and characterized for the gynodioecious grassland perennial Saxifraga granulata. • Methods and Results: Based on genomic screening of leaf material of four individuals from four populations, a total of 21 microsatellite primer pairs were designed for S. granulata. Nine loci were polymorphic and were optimized into two PCR multiplex reactions and tested on 100 individuals from five riparian populations from central Belgium. The number of alleles of the polymorphic loci ranged from three to 18, and gametic heterozygosity ranged from 0.26 to 0.94. • Conclusions: The markers that are presented here are the first microsatellite markers reported for S. granulata and will be used to assess how river systems shape the spatial genetic structure and diversity of riparian populations of this species. |
format | Online Article Text |
id | pubmed-4162666 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41626662014-09-15 Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1) van der Meer, Sascha Van Houdt, Jeroen K. J. Maes, Gregory E. Hellemans, Bart Jacquemyn, Hans Appl Plant Sci Primer Note • Premise of the study: Nine polymorphic and 12 monomorphic microsatellite loci (simple sequence repeats [SSRs]) were isolated and characterized for the gynodioecious grassland perennial Saxifraga granulata. • Methods and Results: Based on genomic screening of leaf material of four individuals from four populations, a total of 21 microsatellite primer pairs were designed for S. granulata. Nine loci were polymorphic and were optimized into two PCR multiplex reactions and tested on 100 individuals from five riparian populations from central Belgium. The number of alleles of the polymorphic loci ranged from three to 18, and gametic heterozygosity ranged from 0.26 to 0.94. • Conclusions: The markers that are presented here are the first microsatellite markers reported for S. granulata and will be used to assess how river systems shape the spatial genetic structure and diversity of riparian populations of this species. Botanical Society of America 2014-08-29 /pmc/articles/PMC4162666/ /pubmed/25225628 http://dx.doi.org/10.3732/apps.1400040 Text en © 2014 van der Meer et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note van der Meer, Sascha Van Houdt, Jeroen K. J. Maes, Gregory E. Hellemans, Bart Jacquemyn, Hans Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1) |
title | Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1) |
title_full | Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1) |
title_fullStr | Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1) |
title_full_unstemmed | Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1) |
title_short | Microsatellite primers for the gynodioecious grassland perennial Saxifraga granulata (Saxifragaceae)(1) |
title_sort | microsatellite primers for the gynodioecious grassland perennial saxifraga granulata (saxifragaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162666/ https://www.ncbi.nlm.nih.gov/pubmed/25225628 http://dx.doi.org/10.3732/apps.1400040 |
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