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Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR
A polymerase chain reaction (PCR) assay was developed for discrimination of Bacillus subtilis from other members of B. subtilis group as well as rapid identification from environmental samples. Primers ENIF and EN1R from endoglucanase gene were used to amplify a1311 bp DNA fragment. The specificity...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Springer Berlin Heidelberg
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162904/ https://www.ncbi.nlm.nih.gov/pubmed/28324377 http://dx.doi.org/10.1007/s13205-013-0177-6 |
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author | Ashe, S. Maji, U. J. Sen, R. Mohanty, S. Maiti, N. K. |
author_facet | Ashe, S. Maji, U. J. Sen, R. Mohanty, S. Maiti, N. K. |
author_sort | Ashe, S. |
collection | PubMed |
description | A polymerase chain reaction (PCR) assay was developed for discrimination of Bacillus subtilis from other members of B. subtilis group as well as rapid identification from environmental samples. Primers ENIF and EN1R from endoglucanase gene were used to amplify a1311 bp DNA fragment. The specificity of the primers was tested with seven reference strains and 28 locally isolated strains of endoglucanase positive Bacillus species. The PCR product was only produced from B. subtilis. The results demonstrated high specificity of two oligonucleotides for B. subtilis. This species-specific PCR method provides a quick, simple, powerful and reliable alternative to conventional methods in the detection and identification of B. subtilis. To our knowledge this is the first report of a B. subtilis specific primer set. |
format | Online Article Text |
id | pubmed-4162904 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | Springer Berlin Heidelberg |
record_format | MEDLINE/PubMed |
spelling | pubmed-41629042014-09-22 Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR Ashe, S. Maji, U. J. Sen, R. Mohanty, S. Maiti, N. K. 3 Biotech Original Article A polymerase chain reaction (PCR) assay was developed for discrimination of Bacillus subtilis from other members of B. subtilis group as well as rapid identification from environmental samples. Primers ENIF and EN1R from endoglucanase gene were used to amplify a1311 bp DNA fragment. The specificity of the primers was tested with seven reference strains and 28 locally isolated strains of endoglucanase positive Bacillus species. The PCR product was only produced from B. subtilis. The results demonstrated high specificity of two oligonucleotides for B. subtilis. This species-specific PCR method provides a quick, simple, powerful and reliable alternative to conventional methods in the detection and identification of B. subtilis. To our knowledge this is the first report of a B. subtilis specific primer set. Springer Berlin Heidelberg 2013-09-28 2014-10 /pmc/articles/PMC4162904/ /pubmed/28324377 http://dx.doi.org/10.1007/s13205-013-0177-6 Text en © The Author(s) 2013 https://creativecommons.org/licenses/by/4.0/ This article is published under license to BioMed Central Ltd. Open Access. This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited. |
spellingShingle | Original Article Ashe, S. Maji, U. J. Sen, R. Mohanty, S. Maiti, N. K. Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR |
title | Specific oligonucleotide primers for
detection of endoglucanase positive Bacillus
subtilis by PCR |
title_full | Specific oligonucleotide primers for
detection of endoglucanase positive Bacillus
subtilis by PCR |
title_fullStr | Specific oligonucleotide primers for
detection of endoglucanase positive Bacillus
subtilis by PCR |
title_full_unstemmed | Specific oligonucleotide primers for
detection of endoglucanase positive Bacillus
subtilis by PCR |
title_short | Specific oligonucleotide primers for
detection of endoglucanase positive Bacillus
subtilis by PCR |
title_sort | specific oligonucleotide primers for
detection of endoglucanase positive bacillus
subtilis by pcr |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162904/ https://www.ncbi.nlm.nih.gov/pubmed/28324377 http://dx.doi.org/10.1007/s13205-013-0177-6 |
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