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Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR

A polymerase chain reaction (PCR) assay was developed for discrimination of Bacillus subtilis from other members of B. subtilis group as well as rapid identification from environmental samples. Primers ENIF and EN1R from endoglucanase gene were used to amplify a1311 bp DNA fragment. The specificity...

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Detalles Bibliográficos
Autores principales: Ashe, S., Maji, U. J., Sen, R., Mohanty, S., Maiti, N. K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer Berlin Heidelberg 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162904/
https://www.ncbi.nlm.nih.gov/pubmed/28324377
http://dx.doi.org/10.1007/s13205-013-0177-6
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author Ashe, S.
Maji, U. J.
Sen, R.
Mohanty, S.
Maiti, N. K.
author_facet Ashe, S.
Maji, U. J.
Sen, R.
Mohanty, S.
Maiti, N. K.
author_sort Ashe, S.
collection PubMed
description A polymerase chain reaction (PCR) assay was developed for discrimination of Bacillus subtilis from other members of B. subtilis group as well as rapid identification from environmental samples. Primers ENIF and EN1R from endoglucanase gene were used to amplify a1311 bp DNA fragment. The specificity of the primers was tested with seven reference strains and 28 locally isolated strains of endoglucanase positive Bacillus species. The PCR product was only produced from B. subtilis. The results demonstrated high specificity of two oligonucleotides for B. subtilis. This species-specific PCR method provides a quick, simple, powerful and reliable alternative to conventional methods in the detection and identification of B. subtilis. To our knowledge this is the first report of a B. subtilis specific primer set.
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spelling pubmed-41629042014-09-22 Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR Ashe, S. Maji, U. J. Sen, R. Mohanty, S. Maiti, N. K. 3 Biotech Original Article A polymerase chain reaction (PCR) assay was developed for discrimination of Bacillus subtilis from other members of B. subtilis group as well as rapid identification from environmental samples. Primers ENIF and EN1R from endoglucanase gene were used to amplify a1311 bp DNA fragment. The specificity of the primers was tested with seven reference strains and 28 locally isolated strains of endoglucanase positive Bacillus species. The PCR product was only produced from B. subtilis. The results demonstrated high specificity of two oligonucleotides for B. subtilis. This species-specific PCR method provides a quick, simple, powerful and reliable alternative to conventional methods in the detection and identification of B. subtilis. To our knowledge this is the first report of a B. subtilis specific primer set. Springer Berlin Heidelberg 2013-09-28 2014-10 /pmc/articles/PMC4162904/ /pubmed/28324377 http://dx.doi.org/10.1007/s13205-013-0177-6 Text en © The Author(s) 2013 https://creativecommons.org/licenses/by/4.0/ This article is published under license to BioMed Central Ltd. Open Access. This article is distributed under the terms of the Creative Commons Attribution License which permits any use, distribution, and reproduction in any medium, provided the original author(s) and the source are credited.
spellingShingle Original Article
Ashe, S.
Maji, U. J.
Sen, R.
Mohanty, S.
Maiti, N. K.
Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR
title Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR
title_full Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR
title_fullStr Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR
title_full_unstemmed Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR
title_short Specific oligonucleotide primers for detection of endoglucanase positive Bacillus subtilis by PCR
title_sort specific oligonucleotide primers for detection of endoglucanase positive bacillus subtilis by pcr
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4162904/
https://www.ncbi.nlm.nih.gov/pubmed/28324377
http://dx.doi.org/10.1007/s13205-013-0177-6
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