Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data

Genome2D is a Windows-based software tool for visualization of bacterial transcriptome and customized datasets on linear chromosome maps constructed from annotated genome sequences. Genome2D facilitates the analysis of transcriptome data by using different color ranges to depict differences in gene-...

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Detalles Bibliográficos
Autores principales: Baerends, Richard JS, Smits, Wiep Klaas, de Jong, Anne, Hamoen, Leendert W, Kok, Jan, Kuipers, Oscar P
Formato: Texto
Lenguaje:English
Publicado: BioMed Central 2004
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC416473/
https://www.ncbi.nlm.nih.gov/pubmed/15128451
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author Baerends, Richard JS
Smits, Wiep Klaas
de Jong, Anne
Hamoen, Leendert W
Kok, Jan
Kuipers, Oscar P
author_facet Baerends, Richard JS
Smits, Wiep Klaas
de Jong, Anne
Hamoen, Leendert W
Kok, Jan
Kuipers, Oscar P
author_sort Baerends, Richard JS
collection PubMed
description Genome2D is a Windows-based software tool for visualization of bacterial transcriptome and customized datasets on linear chromosome maps constructed from annotated genome sequences. Genome2D facilitates the analysis of transcriptome data by using different color ranges to depict differences in gene-expression levels on a genome map. Such output format enables visual inspection of the transcriptome data, and will quickly reveal transcriptional units, without prior knowledge of expression level cutoff values. The compiled version of Genome2D is freely available for academic or non-profit use from .
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spelling pubmed-4164732004-05-22 Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data Baerends, Richard JS Smits, Wiep Klaas de Jong, Anne Hamoen, Leendert W Kok, Jan Kuipers, Oscar P Genome Biol Software Genome2D is a Windows-based software tool for visualization of bacterial transcriptome and customized datasets on linear chromosome maps constructed from annotated genome sequences. Genome2D facilitates the analysis of transcriptome data by using different color ranges to depict differences in gene-expression levels on a genome map. Such output format enables visual inspection of the transcriptome data, and will quickly reveal transcriptional units, without prior knowledge of expression level cutoff values. The compiled version of Genome2D is freely available for academic or non-profit use from . BioMed Central 2004 2004-04-05 /pmc/articles/PMC416473/ /pubmed/15128451 Text en Copyright © 2004 Baerends et al.; licensee BioMed Central Ltd. This is an Open Access article: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL.
spellingShingle Software
Baerends, Richard JS
Smits, Wiep Klaas
de Jong, Anne
Hamoen, Leendert W
Kok, Jan
Kuipers, Oscar P
Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
title Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
title_full Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
title_fullStr Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
title_full_unstemmed Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
title_short Genome2D: a visualization tool for the rapid analysis of bacterial transcriptome data
title_sort genome2d: a visualization tool for the rapid analysis of bacterial transcriptome data
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC416473/
https://www.ncbi.nlm.nih.gov/pubmed/15128451
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