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Biological 2-Input Decoder Circuit in Human Cells
[Image: see text] Decoders are combinational circuits that convert information from n inputs to a maximum of 2(n) outputs. This operation is of major importance in computing systems yet it is vastly underexplored in synthetic biology. Here, we present a synthetic gene network architecture that opera...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165469/ https://www.ncbi.nlm.nih.gov/pubmed/24694115 http://dx.doi.org/10.1021/sb4001596 |
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author | Guinn, Michael Bleris, Leonidas |
author_facet | Guinn, Michael Bleris, Leonidas |
author_sort | Guinn, Michael |
collection | PubMed |
description | [Image: see text] Decoders are combinational circuits that convert information from n inputs to a maximum of 2(n) outputs. This operation is of major importance in computing systems yet it is vastly underexplored in synthetic biology. Here, we present a synthetic gene network architecture that operates as a biological decoder in human cells, converting 2 inputs to 4 outputs. As a proof-of-principle, we use small molecules to emulate the two inputs and fluorescent reporters as the corresponding four outputs. The experiments are performed using transient transfections in human kidney embryonic cells and the characterization by fluorescence microscopy and flow cytometry. We show a clear separation between the ON and OFF mean fluorescent intensity states. Additionally, we adopt the integrated mean fluorescence intensity for the characterization of the circuit and show that this metric is more robust to transfection conditions when compared to the mean fluorescent intensity. To conclude, we present the first implementation of a genetic decoder. This combinational system can be valuable toward engineering higher-order circuits as well as accommodate a multiplexed interface with endogenous cellular functions. |
format | Online Article Text |
id | pubmed-4165469 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-41654692015-04-02 Biological 2-Input Decoder Circuit in Human Cells Guinn, Michael Bleris, Leonidas ACS Synth Biol [Image: see text] Decoders are combinational circuits that convert information from n inputs to a maximum of 2(n) outputs. This operation is of major importance in computing systems yet it is vastly underexplored in synthetic biology. Here, we present a synthetic gene network architecture that operates as a biological decoder in human cells, converting 2 inputs to 4 outputs. As a proof-of-principle, we use small molecules to emulate the two inputs and fluorescent reporters as the corresponding four outputs. The experiments are performed using transient transfections in human kidney embryonic cells and the characterization by fluorescence microscopy and flow cytometry. We show a clear separation between the ON and OFF mean fluorescent intensity states. Additionally, we adopt the integrated mean fluorescence intensity for the characterization of the circuit and show that this metric is more robust to transfection conditions when compared to the mean fluorescent intensity. To conclude, we present the first implementation of a genetic decoder. This combinational system can be valuable toward engineering higher-order circuits as well as accommodate a multiplexed interface with endogenous cellular functions. American Chemical Society 2014-04-02 2014-08-15 /pmc/articles/PMC4165469/ /pubmed/24694115 http://dx.doi.org/10.1021/sb4001596 Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) |
spellingShingle | Guinn, Michael Bleris, Leonidas Biological 2-Input Decoder Circuit in Human Cells |
title | Biological 2-Input Decoder Circuit in Human
Cells |
title_full | Biological 2-Input Decoder Circuit in Human
Cells |
title_fullStr | Biological 2-Input Decoder Circuit in Human
Cells |
title_full_unstemmed | Biological 2-Input Decoder Circuit in Human
Cells |
title_short | Biological 2-Input Decoder Circuit in Human
Cells |
title_sort | biological 2-input decoder circuit in human
cells |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165469/ https://www.ncbi.nlm.nih.gov/pubmed/24694115 http://dx.doi.org/10.1021/sb4001596 |
work_keys_str_mv | AT guinnmichael biological2inputdecodercircuitinhumancells AT blerisleonidas biological2inputdecodercircuitinhumancells |