Cargando…

WholeCellSimDB: a hybrid relational/HDF database for whole-cell model predictions

Mechanistic ‘whole-cell’ models are needed to develop a complete understanding of cell physiology. However, extracting biological insights from whole-cell models requires running and analyzing large numbers of simulations. We developed WholeCellSimDB, a database for organizing whole-cell simulations...

Descripción completa

Detalles Bibliográficos
Autores principales:	Karr, Jonathan R., Phillips, Nolan C., Covert, Markus W.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	Database Tool
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4165886/ https://www.ncbi.nlm.nih.gov/pubmed/25231498 http://dx.doi.org/10.1093/database/bau095

Ejemplares similares

dbWGFP: a database and web server of human whole-genome single nucleotide variants and their functional predictions
por: Wu, Jiaxin, et al.
Publicado: (2016)

The HIV oligonucleotide database (HIVoligoDB)
por: Carneiro, João, et al.
Publicado: (2017)

DBM-DB: the diamondback moth genome database
por: Tang, Weiqi, et al.
Publicado: (2014)

ParkDB: a Parkinson’s disease gene expression database
por: Taccioli, Cristian, et al.
Publicado: (2011)

LeptoDB: an integrated database of genomics and proteomics resource of Leptospira
por: Beriwal, Shruti, et al.
Publicado: (2018)

BarleyVarDB: a database of barley genomic variation
por: Tan, Cong, et al.
Publicado: (2020)

dbWFA: a web-based database for functional annotation of Triticum aestivum transcripts
por: Vincent, Jonathan, et al.
Publicado: (2013)

PIPEMicroDB: microsatellite database and primer generation tool for pigeonpea genome
por: Sarika,, et al.
Publicado: (2013)

Database of RNA binding protein expression and disease dynamics (READ DB)
por: Hashemikhabir, Seyedsasan, et al.
Publicado: (2015)

AtFusionDB: a database of fusion transcripts in Arabidopsis thaliana
por: Singh, Ajeet, et al.
Publicado: (2019)

PlasticDB: a database of microorganisms and proteins linked to plastic biodegradation
por: Gambarini, Victor, et al.
Publicado: (2022)

SymbioGenomesDB: a database for the integration and access to knowledge on host–symbiont relationships
por: Reyes-Prieto, Mariana, et al.
Publicado: (2015)

SinEx DB: a database for single exon coding sequences in mammalian genomes
por: Jorquera, Roddy, et al.
Publicado: (2016)

TP53LNC-DB, the database of lncRNAs in the p53 signalling network
por: Khan, Muhammad Riaz, et al.
Publicado: (2019)

BCL2DB: database of BCL-2 family members and BH3-only proteins
por: Rech de Laval, Valentine, et al.
Publicado: (2014)

ChiloDB: a genomic and transcriptome database for an important rice insect pest Chilo suppressalis
por: Yin, Chuanlin, et al.
Publicado: (2014)

iPathCons and iPathDB: an improved insect pathway construction tool and the database
por: Zhang, Zan, et al.
Publicado: (2014)

LeishDB: a database of coding gene annotation and non-coding RNAs in Leishmania braziliensis
por: Torres, Felipe, et al.
Publicado: (2017)

ResMarkerDB: a database of biomarkers of response to antibody therapy in breast and colorectal cancer
por: Pérez-Granado, Judith, et al.
Publicado: (2019)

MMV-db: vaccinomics and RNA-based therapeutics database for infectious hemorrhagic fever-causing mammarenaviruses
por: Khan, Taimoor, et al.
Publicado: (2021)

CicArVarDB: SNP and InDel database for advancing genetics research and breeding applications in chickpea
por: Doddamani, Dadakhalandar, et al.
Publicado: (2015)

ChagasDB: 80 years of publicly available data on the molecular host response to Trypanosoma cruzi infection in a single database
por: Brochet, Pauline, et al.
Publicado: (2023)

WholeCellKB: model organism databases for comprehensive whole-cell models
por: Karr, Jonathan R., et al.
Publicado: (2013)

RecipeDB: a resource for exploring recipes
por: Batra, Devansh, et al.
Publicado: (2020)

MorusDB: a resource for mulberry genomics and genome biology
por: Li, Tian, et al.
Publicado: (2014)

RegulatorDB: a resource for the analysis of yeast transcriptional regulation
por: Choi, John A., et al.
Publicado: (2017)

hCoronavirusesDB: an integrated bioinformatics resource for human coronaviruses
por: Almansour, Iman, et al.
Publicado: (2022)

WholeCellViz: data visualization for whole-cell models
por: Lee, Ruby, et al.
Publicado: (2013)

SAGE: a comprehensive resource of genetic variants integrating South Asian whole genomes and exomes
por: Hariprakash, Judith Mary, et al.
Publicado: (2018)

The Eimeria Transcript DB: an integrated resource for annotated transcripts of protozoan parasites of the genus Eimeria
por: Rangel, Luiz Thibério, et al.
Publicado: (2013)

myPhyloDB: a local web server for the storage and analysis of metagenomic data
por: Manter, Daniel K., et al.
Publicado: (2016)

CCIDB: a manually curated cell–cell interaction database with cell context information
por: Noh, Jin Young, et al.
Publicado: (2023)

CPPsite: a curated database of cell penetrating peptides
por: Gautam, Ankur, et al.
Publicado: (2012)

DroughtDB: an expert-curated compilation of plant drought stress genes and their homologs in nine species
por: Alter, Svenja, et al.
Publicado: (2015)

CropCircDB: a comprehensive circular RNA resource for crops in response to abiotic stress
por: Wang, Kai, et al.
Publicado: (2019)

LINPS: a database for cancer-cell-specific perturbations of biological networks
por: Ahmed, Mahmoud, et al.
Publicado: (2021)

PreDREM: a database of predicted DNA regulatory motifs from 349 human cell and tissue samples
por: Zheng, Yiyu, et al.
Publicado: (2015)

TeloPIN: a database of telomeric proteins interaction network in mammalian cells
por: Luo, Zhenhua, et al.
Publicado: (2015)

PvP01-DB: computational structural and functional characterization of soluble proteome of PvP01 strain of Plasmodium vivax
por: Singh, Ankita, et al.
Publicado: (2020)

Human Breathomics Database
por: Kuo, Tien-Chueh, et al.
Publicado: (2020)

Cannot write session to /tmp/vufind_sessions/sess_h2v65qu85sebic9jmhjn640mju