miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts

In recent times, information on miRNAs and their binding sites is gaining momentum. Therefore, there is interest in the development of tools extracting miRNA related information from known literature. Hence, we describe GeneAFinder and miRAFinder scripts (open source) developed using python programm...

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Detalles Bibliográficos
Autores principales: Berillo, Olga, Régnier, Mireille, Ivashchenko, Anatoly
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2014
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166775/
https://www.ncbi.nlm.nih.gov/pubmed/25258491
http://dx.doi.org/10.6026/97320630010539
Descripción
Sumario:In recent times, information on miRNAs and their binding sites is gaining momentum. Therefore, there is interest in the development of tools extracting miRNA related information from known literature. Hence, we describe GeneAFinder and miRAFinder scripts (open source) developed using python programming for the semi-automatic extraction and arrangement of updated information on miRNAs, genes and additional data from published article abstracts in PubMed. The scripts are suitable for custom modification as per requirement. AVAILABILITY: miRAFinder and GeneAFinder scripts are free and available for download at http://sites.google.com /site/malaheenee/software.

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