miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts

In recent times, information on miRNAs and their binding sites is gaining momentum. Therefore, there is interest in the development of tools extracting miRNA related information from known literature. Hence, we describe GeneAFinder and miRAFinder scripts (open source) developed using python programm...

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Detalles Bibliográficos
Autores principales: Berillo, Olga, Régnier, Mireille, Ivashchenko, Anatoly
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2014
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166775/
https://www.ncbi.nlm.nih.gov/pubmed/25258491
http://dx.doi.org/10.6026/97320630010539
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author Berillo, Olga
Régnier, Mireille
Ivashchenko, Anatoly
author_facet Berillo, Olga
Régnier, Mireille
Ivashchenko, Anatoly
author_sort Berillo, Olga
collection PubMed
description In recent times, information on miRNAs and their binding sites is gaining momentum. Therefore, there is interest in the development of tools extracting miRNA related information from known literature. Hence, we describe GeneAFinder and miRAFinder scripts (open source) developed using python programming for the semi-automatic extraction and arrangement of updated information on miRNAs, genes and additional data from published article abstracts in PubMed. The scripts are suitable for custom modification as per requirement. AVAILABILITY: miRAFinder and GeneAFinder scripts are free and available for download at http://sites.google.com /site/malaheenee/software.
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spelling pubmed-41667752014-09-25 miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts Berillo, Olga Régnier, Mireille Ivashchenko, Anatoly Bioinformation Software In recent times, information on miRNAs and their binding sites is gaining momentum. Therefore, there is interest in the development of tools extracting miRNA related information from known literature. Hence, we describe GeneAFinder and miRAFinder scripts (open source) developed using python programming for the semi-automatic extraction and arrangement of updated information on miRNAs, genes and additional data from published article abstracts in PubMed. The scripts are suitable for custom modification as per requirement. AVAILABILITY: miRAFinder and GeneAFinder scripts are free and available for download at http://sites.google.com /site/malaheenee/software. Biomedical Informatics 2014-08-30 /pmc/articles/PMC4166775/ /pubmed/25258491 http://dx.doi.org/10.6026/97320630010539 Text en © 2014 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Software
Berillo, Olga
Régnier, Mireille
Ivashchenko, Anatoly
miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts
title miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts
title_full miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts
title_fullStr miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts
title_full_unstemmed miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts
title_short miRAFinder and GeneAFinder scripts: large-scale searching for miRNA and related information in indexed literature abstracts
title_sort mirafinder and geneafinder scripts: large-scale searching for mirna and related information in indexed literature abstracts
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4166775/
https://www.ncbi.nlm.nih.gov/pubmed/25258491
http://dx.doi.org/10.6026/97320630010539
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