Cargando…

Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci

PURPOSE: Cataract is the leading cause of blindness in the world, and in the United States accounts for approximately 60% of Medicare costs related to vision. The purpose of this study was to identify genetic markers for age-related cataract through a genome-wide association study (GWAS). METHODS: I...

Descripción completa

Detalles Bibliográficos
Autores principales: Ritchie, Marylyn D., Verma, Shefali S., Hall, Molly A., Goodloe, Robert J., Berg, Richard L., Carrell, Dave S., Carlson, Christopher S., Chen, Lin, Crosslin, David R., Denny, Joshua C., Jarvik, Gail, Li, Rongling, Linneman, James G., Pathak, Jyoti, Peissig, Peggy, Rasmussen, Luke V., Ramirez, Andrea H., Wang, Xiaoming, Wilke, Russell A., Wolf, Wendy A., Torstenson, Eric S., Turner, Stephen D., McCarty, Catherine A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Vision 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4168835/
https://www.ncbi.nlm.nih.gov/pubmed/25352737
_version_ 1782335626913251328
author Ritchie, Marylyn D.
Verma, Shefali S.
Hall, Molly A.
Goodloe, Robert J.
Berg, Richard L.
Carrell, Dave S.
Carlson, Christopher S.
Chen, Lin
Crosslin, David R.
Denny, Joshua C.
Jarvik, Gail
Li, Rongling
Linneman, James G.
Pathak, Jyoti
Peissig, Peggy
Rasmussen, Luke V.
Ramirez, Andrea H.
Wang, Xiaoming
Wilke, Russell A.
Wolf, Wendy A.
Torstenson, Eric S.
Turner, Stephen D.
McCarty, Catherine A.
author_facet Ritchie, Marylyn D.
Verma, Shefali S.
Hall, Molly A.
Goodloe, Robert J.
Berg, Richard L.
Carrell, Dave S.
Carlson, Christopher S.
Chen, Lin
Crosslin, David R.
Denny, Joshua C.
Jarvik, Gail
Li, Rongling
Linneman, James G.
Pathak, Jyoti
Peissig, Peggy
Rasmussen, Luke V.
Ramirez, Andrea H.
Wang, Xiaoming
Wilke, Russell A.
Wolf, Wendy A.
Torstenson, Eric S.
Turner, Stephen D.
McCarty, Catherine A.
author_sort Ritchie, Marylyn D.
collection PubMed
description PURPOSE: Cataract is the leading cause of blindness in the world, and in the United States accounts for approximately 60% of Medicare costs related to vision. The purpose of this study was to identify genetic markers for age-related cataract through a genome-wide association study (GWAS). METHODS: In the electronic medical records and genomics (eMERGE) network, we ran an electronic phenotyping algorithm on individuals in each of five sites with electronic medical records linked to DNA biobanks. We performed a GWAS using 530,101 SNPs from the Illumina 660W-Quad in a total of 7,397 individuals (5,503 cases and 1,894 controls). We also performed an age-at-diagnosis case-only analysis. RESULTS: We identified several statistically significant associations with age-related cataract (45 SNPs) as well as age at diagnosis (44 SNPs). The 45 SNPs associated with cataract at p<1×10(−5) are in several interesting genes, including ALDOB, MAP3K1, and MEF2C. All have potential biologic relationships with cataracts. CONCLUSIONS: This is the first genome-wide association study of age-related cataract, and several regions of interest have been identified. The eMERGE network has pioneered the exploration of genomic associations in biobanks linked to electronic health records, and this study is another example of the utility of such resources. Explorations of age-related cataract including validation and replication of the association results identified herein are needed in future studies.
format Online
Article
Text
id pubmed-4168835
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher Molecular Vision
record_format MEDLINE/PubMed
spelling pubmed-41688352014-10-28 Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci Ritchie, Marylyn D. Verma, Shefali S. Hall, Molly A. Goodloe, Robert J. Berg, Richard L. Carrell, Dave S. Carlson, Christopher S. Chen, Lin Crosslin, David R. Denny, Joshua C. Jarvik, Gail Li, Rongling Linneman, James G. Pathak, Jyoti Peissig, Peggy Rasmussen, Luke V. Ramirez, Andrea H. Wang, Xiaoming Wilke, Russell A. Wolf, Wendy A. Torstenson, Eric S. Turner, Stephen D. McCarty, Catherine A. Mol Vis Research Article PURPOSE: Cataract is the leading cause of blindness in the world, and in the United States accounts for approximately 60% of Medicare costs related to vision. The purpose of this study was to identify genetic markers for age-related cataract through a genome-wide association study (GWAS). METHODS: In the electronic medical records and genomics (eMERGE) network, we ran an electronic phenotyping algorithm on individuals in each of five sites with electronic medical records linked to DNA biobanks. We performed a GWAS using 530,101 SNPs from the Illumina 660W-Quad in a total of 7,397 individuals (5,503 cases and 1,894 controls). We also performed an age-at-diagnosis case-only analysis. RESULTS: We identified several statistically significant associations with age-related cataract (45 SNPs) as well as age at diagnosis (44 SNPs). The 45 SNPs associated with cataract at p<1×10(−5) are in several interesting genes, including ALDOB, MAP3K1, and MEF2C. All have potential biologic relationships with cataracts. CONCLUSIONS: This is the first genome-wide association study of age-related cataract, and several regions of interest have been identified. The eMERGE network has pioneered the exploration of genomic associations in biobanks linked to electronic health records, and this study is another example of the utility of such resources. Explorations of age-related cataract including validation and replication of the association results identified herein are needed in future studies. Molecular Vision 2014-09-19 /pmc/articles/PMC4168835/ /pubmed/25352737 Text en Copyright © 2014 Molecular Vision. http://creativecommons.org/licenses/by-nc-nd/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited, used for non-commercial purposes, and is not altered or transformed.
spellingShingle Research Article
Ritchie, Marylyn D.
Verma, Shefali S.
Hall, Molly A.
Goodloe, Robert J.
Berg, Richard L.
Carrell, Dave S.
Carlson, Christopher S.
Chen, Lin
Crosslin, David R.
Denny, Joshua C.
Jarvik, Gail
Li, Rongling
Linneman, James G.
Pathak, Jyoti
Peissig, Peggy
Rasmussen, Luke V.
Ramirez, Andrea H.
Wang, Xiaoming
Wilke, Russell A.
Wolf, Wendy A.
Torstenson, Eric S.
Turner, Stephen D.
McCarty, Catherine A.
Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci
title Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci
title_full Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci
title_fullStr Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci
title_full_unstemmed Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci
title_short Electronic medical records and genomics (eMERGE) network exploration in cataract: Several new potential susceptibility loci
title_sort electronic medical records and genomics (emerge) network exploration in cataract: several new potential susceptibility loci
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4168835/
https://www.ncbi.nlm.nih.gov/pubmed/25352737
work_keys_str_mv AT ritchiemarylynd electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT vermashefalis electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT hallmollya electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT goodloerobertj electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT bergrichardl electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT carrelldaves electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT carlsonchristophers electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT chenlin electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT crosslindavidr electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT dennyjoshuac electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT jarvikgail electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT lirongling electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT linnemanjamesg electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT pathakjyoti electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT peissigpeggy electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT rasmussenlukev electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT ramirezandreah electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT wangxiaoming electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT wilkerussella electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT wolfwendya electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT torstensonerics electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT turnerstephend electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci
AT mccartycatherinea electronicmedicalrecordsandgenomicsemergenetworkexplorationincataractseveralnewpotentialsusceptibilityloci