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BioSWR – Semantic Web Services Registry for Bioinformatics

Despite of the variety of available Web services registries specially aimed at Life Sciences, their scope is usually restricted to a limited set of well-defined types of services. While dedicated registries are generally tied to a particular format, general-purpose ones are more adherent to standard...

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Detalles Bibliográficos
Autores principales: Repchevsky, Dmitry, Gelpi, Josep Ll.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4169436/
https://www.ncbi.nlm.nih.gov/pubmed/25233118
http://dx.doi.org/10.1371/journal.pone.0107889
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author Repchevsky, Dmitry
Gelpi, Josep Ll.
author_facet Repchevsky, Dmitry
Gelpi, Josep Ll.
author_sort Repchevsky, Dmitry
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description Despite of the variety of available Web services registries specially aimed at Life Sciences, their scope is usually restricted to a limited set of well-defined types of services. While dedicated registries are generally tied to a particular format, general-purpose ones are more adherent to standards and usually rely on Web Service Definition Language (WSDL). Although WSDL is quite flexible to support common Web services types, its lack of semantic expressiveness led to various initiatives to describe Web services via ontology languages. Nevertheless, WSDL 2.0 descriptions gained a standard representation based on Web Ontology Language (OWL). BioSWR is a novel Web services registry that provides standard Resource Description Framework (RDF) based Web services descriptions along with the traditional WSDL based ones. The registry provides Web-based interface for Web services registration, querying and annotation, and is also accessible programmatically via Representational State Transfer (REST) API or using a SPARQL Protocol and RDF Query Language. BioSWR server is located at http://inb.bsc.es/BioSWR/and its code is available at https://sourceforge.net/projects/bioswr/under the LGPL license.
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spelling pubmed-41694362014-09-22 BioSWR – Semantic Web Services Registry for Bioinformatics Repchevsky, Dmitry Gelpi, Josep Ll. PLoS One Research Article Despite of the variety of available Web services registries specially aimed at Life Sciences, their scope is usually restricted to a limited set of well-defined types of services. While dedicated registries are generally tied to a particular format, general-purpose ones are more adherent to standards and usually rely on Web Service Definition Language (WSDL). Although WSDL is quite flexible to support common Web services types, its lack of semantic expressiveness led to various initiatives to describe Web services via ontology languages. Nevertheless, WSDL 2.0 descriptions gained a standard representation based on Web Ontology Language (OWL). BioSWR is a novel Web services registry that provides standard Resource Description Framework (RDF) based Web services descriptions along with the traditional WSDL based ones. The registry provides Web-based interface for Web services registration, querying and annotation, and is also accessible programmatically via Representational State Transfer (REST) API or using a SPARQL Protocol and RDF Query Language. BioSWR server is located at http://inb.bsc.es/BioSWR/and its code is available at https://sourceforge.net/projects/bioswr/under the LGPL license. Public Library of Science 2014-09-18 /pmc/articles/PMC4169436/ /pubmed/25233118 http://dx.doi.org/10.1371/journal.pone.0107889 Text en © 2014 Repchevsky, Gelpi http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Repchevsky, Dmitry
Gelpi, Josep Ll.
BioSWR – Semantic Web Services Registry for Bioinformatics
title BioSWR – Semantic Web Services Registry for Bioinformatics
title_full BioSWR – Semantic Web Services Registry for Bioinformatics
title_fullStr BioSWR – Semantic Web Services Registry for Bioinformatics
title_full_unstemmed BioSWR – Semantic Web Services Registry for Bioinformatics
title_short BioSWR – Semantic Web Services Registry for Bioinformatics
title_sort bioswr – semantic web services registry for bioinformatics
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4169436/
https://www.ncbi.nlm.nih.gov/pubmed/25233118
http://dx.doi.org/10.1371/journal.pone.0107889
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