Cargando…

RAREMETAL: fast and powerful meta-analysis for rare variants

Summary: RAREMETAL is a computationally efficient tool for meta-analysis of rare variants genotyped using sequencing or arrays. RAREMETAL facilitates analyses of individual studies, accommodates a variety of input file formats, handles related and unrelated individuals, executes both single variant...

Descripción completa

Detalles Bibliográficos
Autores principales:	Feng, Shuang, Liu, Dajiang, Zhan, Xiaowei, Wing, Mary Kate, Abecasis, Gonçalo R.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2014
Materias:	Applications Notes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4173011/ https://www.ncbi.nlm.nih.gov/pubmed/24894501 http://dx.doi.org/10.1093/bioinformatics/btu367

Ejemplares similares

RVTESTS: an efficient and comprehensive tool for rare variant association analysis using sequence data
por: Zhan, Xiaowei, et al.
Publicado: (2016)

METAL: fast and efficient meta-analysis of genomewide association scans
por: Willer, Cristen J., et al.
Publicado: (2010)

The variant call format and VCFtools
por: Danecek, Petr, et al.
Publicado: (2011)

VIRULIGN: fast codon-correct alignment and annotation of viral genomes
por: Libin, Pieter J K, et al.
Publicado: (2019)

cyvcf2: fast, flexible variant analysis with Python
por: Pedersen, Brent S, et al.
Publicado: (2017)

SAMBLASTER: fast duplicate marking and structural variant read extraction
por: Faust, Gregory G., et al.
Publicado: (2014)

LevioSAM: fast lift-over of variant-aware reference alignments
por: Mun, Taher, et al.
Publicado: (2021)

MetaSV: an accurate and integrative structural-variant caller for next generation sequencing
por: Mohiyuddin, Marghoob, et al.
Publicado: (2015)

LASER server: ancestry tracing with genotypes or sequence reads
por: Taliun, Daniel, et al.
Publicado: (2017)

The Sequence Alignment/Map format and SAMtools
por: Li, Heng, et al.
Publicado: (2009)

LocusZoom.js: interactive and embeddable visualization of genetic association study results
por: Boughton, Andrew P, et al.
Publicado: (2021)

Detection of rare disease variants in extended pedigrees using RVS
por: Sherman, Thomas, et al.
Publicado: (2019)

Meta-QC-Chain: Comprehensive and Fast Quality Control Method for Metagenomic Data
por: Zhou, Qian, et al.
Publicado: (2014)

MetaRoute: fast search for relevant metabolic routes for interactive network navigation and visualization
por: Blum, Torsten, et al.
Publicado: (2008)

RevUP: an online scoring system for regulatory variants implicated in rare diseases
por: Correard, Solenne, et al.
Publicado: (2022)

FILTUS: a desktop GUI for fast and efficient detection of disease-causing variants, including a novel autozygosity detector
por: Vigeland, Magnus D., et al.
Publicado: (2016)

GeneTalk: an expert exchange platform for assessing rare sequence variants in personal genomes
por: Kamphans, Tom, et al.
Publicado: (2012)

LocusZoom: regional visualization of genome-wide association scan results
por: Pruim, Randall J., et al.
Publicado: (2010)

MetaMOPE: a web service for mobile phase determination and fast chromatography peaks evaluation for metabolomics
por: Tsai, Dong-Ming, et al.
Publicado: (2023)

EFMDR-Fast: An Application of Empirical Fuzzy Multifactor Dimensionality Reduction for Fast Execution
por: Leem, Sangseob, et al.
Publicado: (2018)

CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data
por: Packer, Jonathan S., et al.
Publicado: (2016)

Novel features and enhancements in BioBin, a tool for the biologically inspired binning and association analysis of rare variants
por: Basile, Anna O, et al.
Publicado: (2018)

MAGI: a Node.js web service for fast microRNA-Seq analysis in a GPU infrastructure
por: Kim, Jihoon, et al.
Publicado: (2014)

IsoAnalytics: a single-cell proteomics web server
por: Palmer, Suzette N, et al.
Publicado: (2023)

GSEL: a fast, flexible python package for detecting signatures of diverse evolutionary forces on genomic regions
por: Abraham, Abin, et al.
Publicado: (2023)

UCSC Data Integrator and Variant Annotation Integrator
por: Hinrichs, Angie S., et al.
Publicado: (2016)

FastPval: a fast and memory efficient program to calculate very low P-values from empirical distribution
por: Li, Mulin Jun, et al.
Publicado: (2010)

HiCLift: a fast and efficient tool for converting chromatin interaction data between genome assemblies
por: Wang, Xiaotao, et al.
Publicado: (2023)

The phers R package: using phenotype risk scores based on electronic health records to study Mendelian disease and rare genetic variants
por: Aref, Layla, et al.
Publicado: (2022)

Sambamba: fast processing of NGS alignment formats
por: Tarasov, Artem, et al.
Publicado: (2015)

Fast and sensitive taxonomic assignment to metagenomic contigs
por: Mirdita, M, et al.
Publicado: (2021)

Bathometer: lightning fast depth-of-reads query
por: Stenzel, U, et al.
Publicado: (2021)

Fast and accurate prediction of protein side-chain conformations
por: Liang, Shide, et al.
Publicado: (2011)

SonicParanoid: fast, accurate and easy orthology inference
por: Cosentino, Salvatore, et al.
Publicado: (2019)

A fast and memory-efficient implementation of the transfer bootstrap
por: Lutteropp, Sarah, et al.
Publicado: (2020)

orfipy: a fast and flexible tool for extracting ORFs
por: Singh, Urminder, et al.
Publicado: (2021)

Pharokka: a fast scalable bacteriophage annotation tool
por: Bouras, George, et al.
Publicado: (2022)

BBKNN: fast batch alignment of single cell transcriptomes
por: Polański, Krzysztof, et al.
Publicado: (2019)

wenda_gpu: fast domain adaptation for genomic data
por: Hippen, Ariel A, et al.
Publicado: (2022)

VariantTools: an extensible framework for developing and testing variant callers
por: Lawrence, Michael, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_mc944q8q3q8dsnflut0u8qkt6q