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Determination of plant silicon content with near infrared reflectance spectroscopy

Silicon (Si) is one of the most common elements in the earth bedrock, and its continental cycle is strongly biologically controlled. Yet, research on the biogeochemical cycle of Si in ecosystems is hampered by the time and cost associated with the currently used chemical analysis methods. Here, we a...

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Autores principales: Smis, Adriaan, Ancin Murguzur, Francisco Javier, Struyf, Eric, Soininen, Eeva M., Herranz Jusdado, Juan G., Meire, Patrick, Bråthen, Kari Anne
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4174135/
https://www.ncbi.nlm.nih.gov/pubmed/25309567
http://dx.doi.org/10.3389/fpls.2014.00496
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author Smis, Adriaan
Ancin Murguzur, Francisco Javier
Struyf, Eric
Soininen, Eeva M.
Herranz Jusdado, Juan G.
Meire, Patrick
Bråthen, Kari Anne
author_facet Smis, Adriaan
Ancin Murguzur, Francisco Javier
Struyf, Eric
Soininen, Eeva M.
Herranz Jusdado, Juan G.
Meire, Patrick
Bråthen, Kari Anne
author_sort Smis, Adriaan
collection PubMed
description Silicon (Si) is one of the most common elements in the earth bedrock, and its continental cycle is strongly biologically controlled. Yet, research on the biogeochemical cycle of Si in ecosystems is hampered by the time and cost associated with the currently used chemical analysis methods. Here, we assessed the suitability of Near Infrared Reflectance Spectroscopy (NIRS) for measuring Si content in plant tissues. NIR spectra depend on the characteristics of the present bonds between H and N, C and O, which can be calibrated against concentrations of various compounds. Because Si in plants always occurs as hydrated condensates of orthosilicic acid (Si(OH)(4)), linked to organic biomolecules, we hypothesized that NIRS is suitable for measuring Si content in plants across a range of plant species. We based our testing on 442 samples of 29 plant species belonging to a range of growth forms. We calibrated the NIRS method against a well-established plant Si analysis method by using partial least-squares regression. Si concentrations ranged from detection limit (0.24 ppmSi) to 7.8% Si on dry weight and were well predicted by NIRS. The model fit with validation data was good across all plant species (n = 141, R(2) = 0.90, RMSEP = 0.24), but improved when only graminoids were modeled (n = 66, R(2) = 0.95, RMSEP = 0.10). A species specific model for the grass Deschampsia cespitosa showed even slightly better results than the model for all graminoids (n = 16, R(2) = 0.93, RMSEP = 0.015). We show for the first time that NIRS is applicable for determining plant Si concentration across a range of plant species and growth forms, and represents a time- and cost-effective alternative to the chemical Si analysis methods. As NIRS can be applied concurrently to a range of plant organic constituents, it opens up unprecedented research possibilities for studying interrelations between Si and other plant compounds in vegetation, and for addressing the role of Si in ecosystems across a range of Si research domains.
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spelling pubmed-41741352014-10-10 Determination of plant silicon content with near infrared reflectance spectroscopy Smis, Adriaan Ancin Murguzur, Francisco Javier Struyf, Eric Soininen, Eeva M. Herranz Jusdado, Juan G. Meire, Patrick Bråthen, Kari Anne Front Plant Sci Plant Science Silicon (Si) is one of the most common elements in the earth bedrock, and its continental cycle is strongly biologically controlled. Yet, research on the biogeochemical cycle of Si in ecosystems is hampered by the time and cost associated with the currently used chemical analysis methods. Here, we assessed the suitability of Near Infrared Reflectance Spectroscopy (NIRS) for measuring Si content in plant tissues. NIR spectra depend on the characteristics of the present bonds between H and N, C and O, which can be calibrated against concentrations of various compounds. Because Si in plants always occurs as hydrated condensates of orthosilicic acid (Si(OH)(4)), linked to organic biomolecules, we hypothesized that NIRS is suitable for measuring Si content in plants across a range of plant species. We based our testing on 442 samples of 29 plant species belonging to a range of growth forms. We calibrated the NIRS method against a well-established plant Si analysis method by using partial least-squares regression. Si concentrations ranged from detection limit (0.24 ppmSi) to 7.8% Si on dry weight and were well predicted by NIRS. The model fit with validation data was good across all plant species (n = 141, R(2) = 0.90, RMSEP = 0.24), but improved when only graminoids were modeled (n = 66, R(2) = 0.95, RMSEP = 0.10). A species specific model for the grass Deschampsia cespitosa showed even slightly better results than the model for all graminoids (n = 16, R(2) = 0.93, RMSEP = 0.015). We show for the first time that NIRS is applicable for determining plant Si concentration across a range of plant species and growth forms, and represents a time- and cost-effective alternative to the chemical Si analysis methods. As NIRS can be applied concurrently to a range of plant organic constituents, it opens up unprecedented research possibilities for studying interrelations between Si and other plant compounds in vegetation, and for addressing the role of Si in ecosystems across a range of Si research domains. Frontiers Media S.A. 2014-09-24 /pmc/articles/PMC4174135/ /pubmed/25309567 http://dx.doi.org/10.3389/fpls.2014.00496 Text en Copyright © 2014 Smis, Ancin Murguzur, Struyf, Soininen, Herranz Jusdado, Meire and Bråthen. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Plant Science
Smis, Adriaan
Ancin Murguzur, Francisco Javier
Struyf, Eric
Soininen, Eeva M.
Herranz Jusdado, Juan G.
Meire, Patrick
Bråthen, Kari Anne
Determination of plant silicon content with near infrared reflectance spectroscopy
title Determination of plant silicon content with near infrared reflectance spectroscopy
title_full Determination of plant silicon content with near infrared reflectance spectroscopy
title_fullStr Determination of plant silicon content with near infrared reflectance spectroscopy
title_full_unstemmed Determination of plant silicon content with near infrared reflectance spectroscopy
title_short Determination of plant silicon content with near infrared reflectance spectroscopy
title_sort determination of plant silicon content with near infrared reflectance spectroscopy
topic Plant Science
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4174135/
https://www.ncbi.nlm.nih.gov/pubmed/25309567
http://dx.doi.org/10.3389/fpls.2014.00496
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