Cargando…

Efficient deformation algorithm for plasmid DNA simulations

BACKGROUND: Plasmid DNA molecules are closed circular molecules that are widely used in life sciences, particularly in gene therapy research. Monte Carlo methods have been used for several years to simulate the conformational behavior of DNA molecules. In each iteration these simulation methods rand...

Descripción completa

Detalles Bibliográficos
Autores principales:	Raposo, Adriano N, Gomes, Abel JP
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2014
Materias:	Methodology Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4175687/ https://www.ncbi.nlm.nih.gov/pubmed/25225011 http://dx.doi.org/10.1186/1471-2105-15-301

Ejemplares similares

An efficient algorithm for the stochastic simulation of the hybridization of DNA to microarrays
por: Arslan, Erdem, et al.
Publicado: (2009)

Efficient transposon mutagenesis mediated by an IPTG-controlled conditional suicide plasmid
por: Naorem, Santa S., et al.
Publicado: (2018)

An Efficient Gatekeeper Algorithm for Detecting GxE
por: Efird, Jimmy T.
Publicado: (2010)

Protocol: a rapid and economical procedure for purification of plasmid or plant DNA with diverse applications in plant biology
por: Li, Jian-Feng, et al.
Publicado: (2010)

A parallel and incremental algorithm for efficient unique signature discovery on DNA databases
por: Lee, Hsiao Ping, et al.
Publicado: (2010)

A unified framework for packing deformable and non-deformable subcellular structures in crowded cryo-electron tomogram simulation
por: Liu, Sinuo, et al.
Publicado: (2020)

Implementation and clinical application of a deformation method for fast simulation of biological tissue formed by fibers and fluid
por: Sardinha, Ana Gabriella de Oliveira, et al.
Publicado: (2016)

iSeg: an efficient algorithm for segmentation of genomic and epigenomic data
por: Girimurugan, Senthil B., et al.
Publicado: (2018)

High-throughput isolation of ultra-pure plasmid DNA by a robotic system
por: Kachel, Volker, et al.
Publicado: (2006)

The systems biology simulation core algorithm
por: Keller, Roland, et al.
Publicado: (2013)

Measuring microRNA reporter activity in skeletal muscle using hydrodynamic limb vein injection of plasmid DNA combined with in vivo imaging
por: Guess, Martin G, et al.
Publicado: (2013)

An efficient one-step site-directed deletion, insertion, single and multiple-site plasmid mutagenesis protocol
por: Liu, Huanting, et al.
Publicado: (2008)

Infectious alphavirus production from a simple plasmid transfection+
por: Steel, J Jordan, et al.
Publicado: (2011)

A streaming multi-GPU implementation of image simulation algorithms for scanning transmission electron microscopy
por: Pryor, Alan, et al.
Publicado: (2017)

More efficient and inclusive time-to-event trials with covariate adjustment: a simulation study
por: Momal, Raphaëlle, et al.
Publicado: (2023)

A Dynamic Bayesian Network model for the simulation of Amyotrophic Lateral Sclerosis progression
por: Zandonà, Alessandro, et al.
Publicado: (2019)

An efficient exact algorithm for computing all pairwise distances between reconciliations in the duplication-transfer-loss model
por: Santichaivekin, Santi, et al.
Publicado: (2019)

An efficient error correction algorithm using FM-index
por: Huang, Yao-Ting, et al.
Publicado: (2017)

Generation of human induced pluripotent stem cells by simple transient transfection of plasmid DNA encoding reprogramming factors
por: Si-Tayeb, Karim, et al.
Publicado: (2010)

A Bayesian method for calculating real-time quantitative PCR calibration curves using absolute plasmid DNA standards
por: Sivaganesan, Mano, et al.
Publicado: (2008)

Efficient proximal gradient algorithm for inference of differential gene networks
por: Wang, Chen, et al.
Publicado: (2019)

CRIMoClo plasmids for modular assembly and orthogonal chromosomal integration of synthetic circuits in Escherichia coli
por: Vecchione, Stefano, et al.
Publicado: (2019)

Generation of a restriction minus enteropathogenic Escherichia coli E2348/69 strain that is efficiently transformed with large, low copy plasmids
por: Hobson, Neil, et al.
Publicado: (2008)

Kunafa knife and play dough is an efficient and cheap simulator to teach diagnostic Point-of-Care Ultrasound (POCUS)
por: Abu-Zidan, Fikri M., et al.
Publicado: (2019)

QuickStep-Cloning: a sequence-independent, ligation-free method for rapid construction of recombinant plasmids
por: Jajesniak, Pawel, et al.
Publicado: (2015)

An efficient algorithm to explore liquid association on a genome-wide scale
por: Gunderson, Tina, et al.
Publicado: (2014)

Comparison of quantification algorithms for circulating cell-free DNA methylation biomarkers in blood plasma from cancer patients
por: de Vos, Luka, et al.
Publicado: (2017)

GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
por: Thomas, Paul D
Publicado: (2010)

A Dominated Coupling From The Past algorithm for the stochastic simulation of networks of biochemical reactions
por: Hemberg, Martin, et al.
Publicado: (2008)

Discovery of cancer vaccination protocols with a genetic algorithm driving an agent based simulator
por: Lollini, Pier-Luigi, et al.
Publicado: (2006)

A fast, efficient chromatin immunoprecipitation method for studying protein-DNA binding in Arabidopsis mesophyll protoplasts
por: Lee, Jeong Hwan, et al.
Publicado: (2017)

An algorithm of discovering signatures from DNA databases on a computer cluster
por: Lee, Hsiao Ping, et al.
Publicado: (2014)

Modeling cellular deformations using the level set formalism
por: Yang, Liu, et al.
Publicado: (2008)

MAR-mediated integration of plasmid vectors for in vivo gene transfer and regulation
por: Puttini, Stefania, et al.
Publicado: (2013)

Identification and classification of human cytomegalovirus capsids in textured electron micrographs using deformed template matching
por: Ryner, Martin, et al.
Publicado: (2006)

Molecular approaches to the analysis of deformed wing virus replication and pathogenesis in the honey bee, Apis mellifera
por: Boncristiani, Humberto F, et al.
Publicado: (2009)

Secondary correction of nasal deformities in cleft lip and palate patients: surgical technique and outcome evaluation
por: Vass, Gabor, et al.
Publicado: (2016)

Efficient simulation of stochastic chemical kinetics with the Stochastic Bulirsch-Stoer extrapolation method
por: Székely, Tamás, et al.
Publicado: (2014)

Use of Plasmid pVMG to Make Transcriptional ß-Glucuronidase Reporter Gene Fusions in the Rhizobium Genome for Monitoring the Expression of Rhizobial Genes In Vivo
por: Gao, Mengsheng, et al.
Publicado: (2019)

LTC: a novel algorithm to improve the efficiency of contig assembly for physical mapping in complex genomes
por: Frenkel, Zeev, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_1gcvki9n4gnl81a90732fufoie