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Membrane current series monitoring: essential reduction of data points to finite number of stable parameters

In traditional studies of changes in cell membrane potential or trans-membrane currents a large part of the recorded data presents “a pure noise.” This noise results mainly from the random openings of membrane ionic channels. Different types of stationary or non-stationary noise analysis have been u...

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Autores principales: Nigmatullin, Raoul R., Giniatullin, Rashid A., Skorinkin, Andrei I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4176047/
https://www.ncbi.nlm.nih.gov/pubmed/25309416
http://dx.doi.org/10.3389/fncom.2014.00120
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author Nigmatullin, Raoul R.
Giniatullin, Rashid A.
Skorinkin, Andrei I.
author_facet Nigmatullin, Raoul R.
Giniatullin, Rashid A.
Skorinkin, Andrei I.
author_sort Nigmatullin, Raoul R.
collection PubMed
description In traditional studies of changes in cell membrane potential or trans-membrane currents a large part of the recorded data presents “a pure noise.” This noise results mainly from the random openings of membrane ionic channels. Different types of stationary or non-stationary noise analysis have been used in electrophysiological experiments for identification of channels kinetic states. But these methods have a limited power and often cannot answer to the main question of the experimental study: do external factors induce a significant change of channels kinetics? A new method suggested in the current study is based on the scaling properties of the beta-distribution function that allows reducing the series containing 200,000 and more data points to analysis of only 10–20 stable parameters. The following clusterization using the generalized Pearson correlation function allows taking into account the influence of an external factor and combine/separate different parameters of interest into a statistical cluster considering the influential parameter. This method which we call BRC (Beta distribution-Reduction-Clusterization) opens new possibilities in creation of a largely reduced database while extracting specific fingerprints of the long-term series. The BRC method was validated using patch clamp current recordings containing 250,000 data points obtained from the living cells and from open tip electrode. The numerical distinction between these two series in terms of the reduced parameters was obtained.
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spelling pubmed-41760472014-10-10 Membrane current series monitoring: essential reduction of data points to finite number of stable parameters Nigmatullin, Raoul R. Giniatullin, Rashid A. Skorinkin, Andrei I. Front Comput Neurosci Neuroscience In traditional studies of changes in cell membrane potential or trans-membrane currents a large part of the recorded data presents “a pure noise.” This noise results mainly from the random openings of membrane ionic channels. Different types of stationary or non-stationary noise analysis have been used in electrophysiological experiments for identification of channels kinetic states. But these methods have a limited power and often cannot answer to the main question of the experimental study: do external factors induce a significant change of channels kinetics? A new method suggested in the current study is based on the scaling properties of the beta-distribution function that allows reducing the series containing 200,000 and more data points to analysis of only 10–20 stable parameters. The following clusterization using the generalized Pearson correlation function allows taking into account the influence of an external factor and combine/separate different parameters of interest into a statistical cluster considering the influential parameter. This method which we call BRC (Beta distribution-Reduction-Clusterization) opens new possibilities in creation of a largely reduced database while extracting specific fingerprints of the long-term series. The BRC method was validated using patch clamp current recordings containing 250,000 data points obtained from the living cells and from open tip electrode. The numerical distinction between these two series in terms of the reduced parameters was obtained. Frontiers Media S.A. 2014-09-26 /pmc/articles/PMC4176047/ /pubmed/25309416 http://dx.doi.org/10.3389/fncom.2014.00120 Text en Copyright © 2014 Nigmatullin, Giniatullin and Skorinkin. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) or licensor are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Neuroscience
Nigmatullin, Raoul R.
Giniatullin, Rashid A.
Skorinkin, Andrei I.
Membrane current series monitoring: essential reduction of data points to finite number of stable parameters
title Membrane current series monitoring: essential reduction of data points to finite number of stable parameters
title_full Membrane current series monitoring: essential reduction of data points to finite number of stable parameters
title_fullStr Membrane current series monitoring: essential reduction of data points to finite number of stable parameters
title_full_unstemmed Membrane current series monitoring: essential reduction of data points to finite number of stable parameters
title_short Membrane current series monitoring: essential reduction of data points to finite number of stable parameters
title_sort membrane current series monitoring: essential reduction of data points to finite number of stable parameters
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4176047/
https://www.ncbi.nlm.nih.gov/pubmed/25309416
http://dx.doi.org/10.3389/fncom.2014.00120
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