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SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury

BACKGROUND: EHR (Electronic Health Record) system has led to development of specialized form of clinical databases which enable storage of information in temporal prospective. It has been a big challenge for mining this form of clinical data considering varied temporal points. This study proposes a...

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Detalles Bibliográficos
Autores principales: Sengupta, Dipankar, Naik, Pradeep K
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2013
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177143/
https://www.ncbi.nlm.nih.gov/pubmed/24283349
http://dx.doi.org/10.1186/2043-9113-3-24
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author Sengupta, Dipankar
Naik, Pradeep K
author_facet Sengupta, Dipankar
Naik, Pradeep K
author_sort Sengupta, Dipankar
collection PubMed
description BACKGROUND: EHR (Electronic Health Record) system has led to development of specialized form of clinical databases which enable storage of information in temporal prospective. It has been a big challenge for mining this form of clinical data considering varied temporal points. This study proposes a conjoined solution to analyze the clinical parameters akin to a disease. We have used “association rule mining algorithm” to discover association rules among clinical parameters that can be augmented with the disease. Furthermore, we have proposed a new algorithm, SN algorithm, to map clinical parameters along with a disease state at various temporal points. RESULT: SN algorithm is based on Jacobian approach, which augurs the state of a disease ‘S(n)’ at a given temporal point ‘T(n)’ by mapping the derivatives with the temporal point ‘T(0)’, whose state of disease ‘S(0)’ is known. The predictive ability of the proposed algorithm is evaluated in a temporal clinical data set of brain tumor patients. We have obtained a very high prediction accuracy of ~97% for a brain tumor state ‘S(n)’ for any temporal point ‘T(n)’. CONCLUSION: The results indicate that the methodology followed may be of good value to the diagnostic procedure, especially for analyzing temporal form of clinical data.
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spelling pubmed-41771432014-10-23 SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury Sengupta, Dipankar Naik, Pradeep K J Clin Bioinforma Methodology BACKGROUND: EHR (Electronic Health Record) system has led to development of specialized form of clinical databases which enable storage of information in temporal prospective. It has been a big challenge for mining this form of clinical data considering varied temporal points. This study proposes a conjoined solution to analyze the clinical parameters akin to a disease. We have used “association rule mining algorithm” to discover association rules among clinical parameters that can be augmented with the disease. Furthermore, we have proposed a new algorithm, SN algorithm, to map clinical parameters along with a disease state at various temporal points. RESULT: SN algorithm is based on Jacobian approach, which augurs the state of a disease ‘S(n)’ at a given temporal point ‘T(n)’ by mapping the derivatives with the temporal point ‘T(0)’, whose state of disease ‘S(0)’ is known. The predictive ability of the proposed algorithm is evaluated in a temporal clinical data set of brain tumor patients. We have obtained a very high prediction accuracy of ~97% for a brain tumor state ‘S(n)’ for any temporal point ‘T(n)’. CONCLUSION: The results indicate that the methodology followed may be of good value to the diagnostic procedure, especially for analyzing temporal form of clinical data. BioMed Central 2013-11-28 /pmc/articles/PMC4177143/ /pubmed/24283349 http://dx.doi.org/10.1186/2043-9113-3-24 Text en Copyright © 2013 Sengupta and Naik; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Methodology
Sengupta, Dipankar
Naik, Pradeep K
SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
title SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
title_full SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
title_fullStr SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
title_full_unstemmed SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
title_short SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
title_sort sn algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
topic Methodology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177143/
https://www.ncbi.nlm.nih.gov/pubmed/24283349
http://dx.doi.org/10.1186/2043-9113-3-24
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