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SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury
BACKGROUND: EHR (Electronic Health Record) system has led to development of specialized form of clinical databases which enable storage of information in temporal prospective. It has been a big challenge for mining this form of clinical data considering varied temporal points. This study proposes a...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2013
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177143/ https://www.ncbi.nlm.nih.gov/pubmed/24283349 http://dx.doi.org/10.1186/2043-9113-3-24 |
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author | Sengupta, Dipankar Naik, Pradeep K |
author_facet | Sengupta, Dipankar Naik, Pradeep K |
author_sort | Sengupta, Dipankar |
collection | PubMed |
description | BACKGROUND: EHR (Electronic Health Record) system has led to development of specialized form of clinical databases which enable storage of information in temporal prospective. It has been a big challenge for mining this form of clinical data considering varied temporal points. This study proposes a conjoined solution to analyze the clinical parameters akin to a disease. We have used “association rule mining algorithm” to discover association rules among clinical parameters that can be augmented with the disease. Furthermore, we have proposed a new algorithm, SN algorithm, to map clinical parameters along with a disease state at various temporal points. RESULT: SN algorithm is based on Jacobian approach, which augurs the state of a disease ‘S(n)’ at a given temporal point ‘T(n)’ by mapping the derivatives with the temporal point ‘T(0)’, whose state of disease ‘S(0)’ is known. The predictive ability of the proposed algorithm is evaluated in a temporal clinical data set of brain tumor patients. We have obtained a very high prediction accuracy of ~97% for a brain tumor state ‘S(n)’ for any temporal point ‘T(n)’. CONCLUSION: The results indicate that the methodology followed may be of good value to the diagnostic procedure, especially for analyzing temporal form of clinical data. |
format | Online Article Text |
id | pubmed-4177143 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2013 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-41771432014-10-23 SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury Sengupta, Dipankar Naik, Pradeep K J Clin Bioinforma Methodology BACKGROUND: EHR (Electronic Health Record) system has led to development of specialized form of clinical databases which enable storage of information in temporal prospective. It has been a big challenge for mining this form of clinical data considering varied temporal points. This study proposes a conjoined solution to analyze the clinical parameters akin to a disease. We have used “association rule mining algorithm” to discover association rules among clinical parameters that can be augmented with the disease. Furthermore, we have proposed a new algorithm, SN algorithm, to map clinical parameters along with a disease state at various temporal points. RESULT: SN algorithm is based on Jacobian approach, which augurs the state of a disease ‘S(n)’ at a given temporal point ‘T(n)’ by mapping the derivatives with the temporal point ‘T(0)’, whose state of disease ‘S(0)’ is known. The predictive ability of the proposed algorithm is evaluated in a temporal clinical data set of brain tumor patients. We have obtained a very high prediction accuracy of ~97% for a brain tumor state ‘S(n)’ for any temporal point ‘T(n)’. CONCLUSION: The results indicate that the methodology followed may be of good value to the diagnostic procedure, especially for analyzing temporal form of clinical data. BioMed Central 2013-11-28 /pmc/articles/PMC4177143/ /pubmed/24283349 http://dx.doi.org/10.1186/2043-9113-3-24 Text en Copyright © 2013 Sengupta and Naik; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Methodology Sengupta, Dipankar Naik, Pradeep K SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury |
title | SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury |
title_full | SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury |
title_fullStr | SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury |
title_full_unstemmed | SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury |
title_short | SN algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury |
title_sort | sn algorithm: analysis of temporal clinical data for mining periodic patterns and impending augury |
topic | Methodology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4177143/ https://www.ncbi.nlm.nih.gov/pubmed/24283349 http://dx.doi.org/10.1186/2043-9113-3-24 |
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