Cargando…
Estimating overannotation across prokaryotic genomes using BLAST+, UBLAST, LAST and BLAT
BACKGROUND: As the number of genomes in public databases increases, it becomes more important to be able to quickly choose the best annotated genomes for further analyses in comparative genomics and evolution. A proxy to annotation quality is the estimation of overannotation by comparing annotated c...
Autores principales: | Moreno-Hagelsieb, Gabriel, Hudy-Yuffa, Brigitte |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2014
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4180129/ https://www.ncbi.nlm.nih.gov/pubmed/25228073 http://dx.doi.org/10.1186/1756-0500-7-651 |
Ejemplares similares
-
Quickly Finding Orthologs as Reciprocal Best Hits with BLAT, LAST, and UBLAST: How Much Do We Miss?
por: Ward, Natalie, et al.
Publicado: (2014) -
PxBLAT: An Ergonomic and Efficient Python Binding Library for BLAT
por: Li, Yangyang, et al.
Publicado: (2023) -
Progress in quickly finding orthologs as reciprocal best hits: comparing blast, last, diamond and MMseqs2
por: Hernández-Salmerón, Julie E., et al.
Publicado: (2020) -
The loose evolutionary relationships between transcription factors and other gene products across prokaryotes
por: del Grande, Marc, et al.
Publicado: (2014) -
The distinctive signatures of promoter regions and operon junctions across prokaryotes
por: Janga, Sarath Chandra, et al.
Publicado: (2006)