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Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects
[Image: see text] A NMR protocol is introduced that permits accurate measurement of minute, remote chemical shift perturbations (CSPs), caused by a mutation-induced change in the electric field. Using protein GB3 as a model system, (1)H(N) CSPs in K19A and K19E mutants can be fitted to small changes...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2014
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183759/ https://www.ncbi.nlm.nih.gov/pubmed/25192058 http://dx.doi.org/10.1021/ja505852b |
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author | An, Liaoyuan Wang, Yefei Zhang, Ning Yan, Shihai Bax, Ad Yao, Lishan |
author_facet | An, Liaoyuan Wang, Yefei Zhang, Ning Yan, Shihai Bax, Ad Yao, Lishan |
author_sort | An, Liaoyuan |
collection | PubMed |
description | [Image: see text] A NMR protocol is introduced that permits accurate measurement of minute, remote chemical shift perturbations (CSPs), caused by a mutation-induced change in the electric field. Using protein GB3 as a model system, (1)H(N) CSPs in K19A and K19E mutants can be fitted to small changes in the electric field at distal sites in the protein using the Buckingham equation, yielding an apparent dielectric constant ε(a) of 8.6 ± 0.8 at 298 K. These CSPs, and their derived ε(a) value, scale strongly with temperature. For example, CSPs at 313 K are about ∼30% smaller than those at 278 K, corresponding to an effective ε(a) value of about 7.3 at 278 K and 10.5 at 313 K. Molecular dynamics simulations in explicit solvent indicate that solvent water makes a significant contribution to ε(a). |
format | Online Article Text |
id | pubmed-4183759 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-41837592015-09-05 Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects An, Liaoyuan Wang, Yefei Zhang, Ning Yan, Shihai Bax, Ad Yao, Lishan J Am Chem Soc [Image: see text] A NMR protocol is introduced that permits accurate measurement of minute, remote chemical shift perturbations (CSPs), caused by a mutation-induced change in the electric field. Using protein GB3 as a model system, (1)H(N) CSPs in K19A and K19E mutants can be fitted to small changes in the electric field at distal sites in the protein using the Buckingham equation, yielding an apparent dielectric constant ε(a) of 8.6 ± 0.8 at 298 K. These CSPs, and their derived ε(a) value, scale strongly with temperature. For example, CSPs at 313 K are about ∼30% smaller than those at 278 K, corresponding to an effective ε(a) value of about 7.3 at 278 K and 10.5 at 313 K. Molecular dynamics simulations in explicit solvent indicate that solvent water makes a significant contribution to ε(a). American Chemical Society 2014-09-05 2014-09-17 /pmc/articles/PMC4183759/ /pubmed/25192058 http://dx.doi.org/10.1021/ja505852b Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) |
spellingShingle | An, Liaoyuan Wang, Yefei Zhang, Ning Yan, Shihai Bax, Ad Yao, Lishan Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects |
title | Protein
Apparent Dielectric Constant and Its Temperature
Dependence from Remote Chemical Shift Effects |
title_full | Protein
Apparent Dielectric Constant and Its Temperature
Dependence from Remote Chemical Shift Effects |
title_fullStr | Protein
Apparent Dielectric Constant and Its Temperature
Dependence from Remote Chemical Shift Effects |
title_full_unstemmed | Protein
Apparent Dielectric Constant and Its Temperature
Dependence from Remote Chemical Shift Effects |
title_short | Protein
Apparent Dielectric Constant and Its Temperature
Dependence from Remote Chemical Shift Effects |
title_sort | protein
apparent dielectric constant and its temperature
dependence from remote chemical shift effects |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183759/ https://www.ncbi.nlm.nih.gov/pubmed/25192058 http://dx.doi.org/10.1021/ja505852b |
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