Cargando…

Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects

[Image: see text] A NMR protocol is introduced that permits accurate measurement of minute, remote chemical shift perturbations (CSPs), caused by a mutation-induced change in the electric field. Using protein GB3 as a model system, (1)H(N) CSPs in K19A and K19E mutants can be fitted to small changes...

Descripción completa

Detalles Bibliográficos
Autores principales: An, Liaoyuan, Wang, Yefei, Zhang, Ning, Yan, Shihai, Bax, Ad, Yao, Lishan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2014
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183759/
https://www.ncbi.nlm.nih.gov/pubmed/25192058
http://dx.doi.org/10.1021/ja505852b
_version_ 1782337743923183616
author An, Liaoyuan
Wang, Yefei
Zhang, Ning
Yan, Shihai
Bax, Ad
Yao, Lishan
author_facet An, Liaoyuan
Wang, Yefei
Zhang, Ning
Yan, Shihai
Bax, Ad
Yao, Lishan
author_sort An, Liaoyuan
collection PubMed
description [Image: see text] A NMR protocol is introduced that permits accurate measurement of minute, remote chemical shift perturbations (CSPs), caused by a mutation-induced change in the electric field. Using protein GB3 as a model system, (1)H(N) CSPs in K19A and K19E mutants can be fitted to small changes in the electric field at distal sites in the protein using the Buckingham equation, yielding an apparent dielectric constant ε(a) of 8.6 ± 0.8 at 298 K. These CSPs, and their derived ε(a) value, scale strongly with temperature. For example, CSPs at 313 K are about ∼30% smaller than those at 278 K, corresponding to an effective ε(a) value of about 7.3 at 278 K and 10.5 at 313 K. Molecular dynamics simulations in explicit solvent indicate that solvent water makes a significant contribution to ε(a).
format Online
Article
Text
id pubmed-4183759
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher American Chemical Society
record_format MEDLINE/PubMed
spelling pubmed-41837592015-09-05 Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects An, Liaoyuan Wang, Yefei Zhang, Ning Yan, Shihai Bax, Ad Yao, Lishan J Am Chem Soc [Image: see text] A NMR protocol is introduced that permits accurate measurement of minute, remote chemical shift perturbations (CSPs), caused by a mutation-induced change in the electric field. Using protein GB3 as a model system, (1)H(N) CSPs in K19A and K19E mutants can be fitted to small changes in the electric field at distal sites in the protein using the Buckingham equation, yielding an apparent dielectric constant ε(a) of 8.6 ± 0.8 at 298 K. These CSPs, and their derived ε(a) value, scale strongly with temperature. For example, CSPs at 313 K are about ∼30% smaller than those at 278 K, corresponding to an effective ε(a) value of about 7.3 at 278 K and 10.5 at 313 K. Molecular dynamics simulations in explicit solvent indicate that solvent water makes a significant contribution to ε(a). American Chemical Society 2014-09-05 2014-09-17 /pmc/articles/PMC4183759/ /pubmed/25192058 http://dx.doi.org/10.1021/ja505852b Text en Copyright © 2014 American Chemical Society Terms of Use (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html)
spellingShingle An, Liaoyuan
Wang, Yefei
Zhang, Ning
Yan, Shihai
Bax, Ad
Yao, Lishan
Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects
title Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects
title_full Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects
title_fullStr Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects
title_full_unstemmed Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects
title_short Protein Apparent Dielectric Constant and Its Temperature Dependence from Remote Chemical Shift Effects
title_sort protein apparent dielectric constant and its temperature dependence from remote chemical shift effects
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4183759/
https://www.ncbi.nlm.nih.gov/pubmed/25192058
http://dx.doi.org/10.1021/ja505852b
work_keys_str_mv AT anliaoyuan proteinapparentdielectricconstantanditstemperaturedependencefromremotechemicalshifteffects
AT wangyefei proteinapparentdielectricconstantanditstemperaturedependencefromremotechemicalshifteffects
AT zhangning proteinapparentdielectricconstantanditstemperaturedependencefromremotechemicalshifteffects
AT yanshihai proteinapparentdielectricconstantanditstemperaturedependencefromremotechemicalshifteffects
AT baxad proteinapparentdielectricconstantanditstemperaturedependencefromremotechemicalshifteffects
AT yaolishan proteinapparentdielectricconstantanditstemperaturedependencefromremotechemicalshifteffects