Cargando…

SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes

Chondrichthyan fishes are a diverse class of gnathostomes that provide a valuable perspective on fundamental characteristics shared by all jawed and limbed vertebrates. Studies of phylogeny, species diversity, population structure, conservation, and physiology are accelerated by genomic, transcripto...

Descripción completa

Detalles Bibliográficos
Autores principales: Wyffels, Jennifer, L. King, Benjamin, Vincent, James, Chen, Chuming, Wu, Cathy H., Polson, Shawn W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000Research 2014
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184313/
https://www.ncbi.nlm.nih.gov/pubmed/25309735
http://dx.doi.org/10.12688/f1000research.4996.1
_version_ 1782337825007468544
author Wyffels, Jennifer
L. King, Benjamin
Vincent, James
Chen, Chuming
Wu, Cathy H.
Polson, Shawn W.
author_facet Wyffels, Jennifer
L. King, Benjamin
Vincent, James
Chen, Chuming
Wu, Cathy H.
Polson, Shawn W.
author_sort Wyffels, Jennifer
collection PubMed
description Chondrichthyan fishes are a diverse class of gnathostomes that provide a valuable perspective on fundamental characteristics shared by all jawed and limbed vertebrates. Studies of phylogeny, species diversity, population structure, conservation, and physiology are accelerated by genomic, transcriptomic and protein sequence data. These data are widely available for many sarcopterygii (coelacanth, lungfish and tetrapods) and actinoptergii (ray-finned fish including teleosts) taxa, but limited for chondrichthyan fishes.  In this study, we summarize available data for chondrichthyes and describe resources for one of the largest projects to characterize one of these fish, Leucoraja erinacea, the little skate.  SkateBase ( http://skatebase.org) serves as the skate genome project portal linking data, research tools, and teaching resources.
format Online
Article
Text
id pubmed-4184313
institution National Center for Biotechnology Information
language English
publishDate 2014
publisher F1000Research
record_format MEDLINE/PubMed
spelling pubmed-41843132014-10-09 SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes Wyffels, Jennifer L. King, Benjamin Vincent, James Chen, Chuming Wu, Cathy H. Polson, Shawn W. F1000Res Research Article Chondrichthyan fishes are a diverse class of gnathostomes that provide a valuable perspective on fundamental characteristics shared by all jawed and limbed vertebrates. Studies of phylogeny, species diversity, population structure, conservation, and physiology are accelerated by genomic, transcriptomic and protein sequence data. These data are widely available for many sarcopterygii (coelacanth, lungfish and tetrapods) and actinoptergii (ray-finned fish including teleosts) taxa, but limited for chondrichthyan fishes.  In this study, we summarize available data for chondrichthyes and describe resources for one of the largest projects to characterize one of these fish, Leucoraja erinacea, the little skate.  SkateBase ( http://skatebase.org) serves as the skate genome project portal linking data, research tools, and teaching resources. F1000Research 2014-08-12 /pmc/articles/PMC4184313/ /pubmed/25309735 http://dx.doi.org/10.12688/f1000research.4996.1 Text en Copyright: © 2014 Wyffels J et al. http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. http://creativecommons.org/publicdomain/zero/1.0/ Data associated with the article are available under the terms of the Creative Commons Zero "No rights reserved" data waiver (CC0 1.0 Public domain dedication).
spellingShingle Research Article
Wyffels, Jennifer
L. King, Benjamin
Vincent, James
Chen, Chuming
Wu, Cathy H.
Polson, Shawn W.
SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
title SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
title_full SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
title_fullStr SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
title_full_unstemmed SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
title_short SkateBase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
title_sort skatebase, an elasmobranch genome project and collection of molecular resources for chondrichthyan fishes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4184313/
https://www.ncbi.nlm.nih.gov/pubmed/25309735
http://dx.doi.org/10.12688/f1000research.4996.1
work_keys_str_mv AT wyffelsjennifer skatebaseanelasmobranchgenomeprojectandcollectionofmolecularresourcesforchondrichthyanfishes
AT lkingbenjamin skatebaseanelasmobranchgenomeprojectandcollectionofmolecularresourcesforchondrichthyanfishes
AT vincentjames skatebaseanelasmobranchgenomeprojectandcollectionofmolecularresourcesforchondrichthyanfishes
AT chenchuming skatebaseanelasmobranchgenomeprojectandcollectionofmolecularresourcesforchondrichthyanfishes
AT wucathyh skatebaseanelasmobranchgenomeprojectandcollectionofmolecularresourcesforchondrichthyanfishes
AT polsonshawnw skatebaseanelasmobranchgenomeprojectandcollectionofmolecularresourcesforchondrichthyanfishes