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Microsatellite primer development for post oak, Quercus stellata (Fagaceae)(1)
• Premise of the study: The American Cross Timbers forest ecosystem runs from southeastern Kansas to Central Texas and is primarily composed of post oak (Quercus stellata). This old-growth forest currently occupies only about 2% of its ancestral range. To facilitate genetic research on this species,...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Botanical Society of America
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189500/ https://www.ncbi.nlm.nih.gov/pubmed/25309841 http://dx.doi.org/10.3732/apps.1400070 |
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author | Chatwin, Warren B. Carpenter, Kyrie K. Jimenez, Felix R. Elzinga, Dave B. Johnson, Leigh A. Maughan, Peter J. |
author_facet | Chatwin, Warren B. Carpenter, Kyrie K. Jimenez, Felix R. Elzinga, Dave B. Johnson, Leigh A. Maughan, Peter J. |
author_sort | Chatwin, Warren B. |
collection | PubMed |
description | • Premise of the study: The American Cross Timbers forest ecosystem runs from southeastern Kansas to Central Texas and is primarily composed of post oak (Quercus stellata). This old-growth forest currently occupies only about 2% of its ancestral range. To facilitate genetic research on this species, we developed microsatellite primers specific to post oak from reduced genomic libraries. • Methods and Results: Two Q. stellata individuals, sampled from the northern and southern range of the post oak forest, were subject to genomic reduction and 454 pyrosequencing. Bioinformatic analysis identified putative microsatellites from which 12 polymorphic primer sets were screened on three populations. The number of alleles observed ranged from five to 20 across all populations, while observed and expected heterozygosity values ranged from 0.05 to 0.833 and 0.236 to 0.893, respectively, within individual populations. • Conclusions: We report the development of microsatellite markers, specific to post oak, to aid the study of genetic diversity and population structure of extant forest remnants. |
format | Online Article Text |
id | pubmed-4189500 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2014 |
publisher | Botanical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-41895002014-10-10 Microsatellite primer development for post oak, Quercus stellata (Fagaceae)(1) Chatwin, Warren B. Carpenter, Kyrie K. Jimenez, Felix R. Elzinga, Dave B. Johnson, Leigh A. Maughan, Peter J. Appl Plant Sci Primer Note • Premise of the study: The American Cross Timbers forest ecosystem runs from southeastern Kansas to Central Texas and is primarily composed of post oak (Quercus stellata). This old-growth forest currently occupies only about 2% of its ancestral range. To facilitate genetic research on this species, we developed microsatellite primers specific to post oak from reduced genomic libraries. • Methods and Results: Two Q. stellata individuals, sampled from the northern and southern range of the post oak forest, were subject to genomic reduction and 454 pyrosequencing. Bioinformatic analysis identified putative microsatellites from which 12 polymorphic primer sets were screened on three populations. The number of alleles observed ranged from five to 20 across all populations, while observed and expected heterozygosity values ranged from 0.05 to 0.833 and 0.236 to 0.893, respectively, within individual populations. • Conclusions: We report the development of microsatellite markers, specific to post oak, to aid the study of genetic diversity and population structure of extant forest remnants. Botanical Society of America 2014-10-03 /pmc/articles/PMC4189500/ /pubmed/25309841 http://dx.doi.org/10.3732/apps.1400070 Text en © 2014 Chatwin et al. Published by the Botanical Society of America http://creativecommons.org/licenses/by-nc/4.0/ This work is licensed under a Creative Commons Attribution License (CC-BY-NC-SA). |
spellingShingle | Primer Note Chatwin, Warren B. Carpenter, Kyrie K. Jimenez, Felix R. Elzinga, Dave B. Johnson, Leigh A. Maughan, Peter J. Microsatellite primer development for post oak, Quercus stellata (Fagaceae)(1) |
title | Microsatellite primer development for post oak, Quercus stellata (Fagaceae)(1) |
title_full | Microsatellite primer development for post oak, Quercus stellata (Fagaceae)(1) |
title_fullStr | Microsatellite primer development for post oak, Quercus stellata (Fagaceae)(1) |
title_full_unstemmed | Microsatellite primer development for post oak, Quercus stellata (Fagaceae)(1) |
title_short | Microsatellite primer development for post oak, Quercus stellata (Fagaceae)(1) |
title_sort | microsatellite primer development for post oak, quercus stellata (fagaceae)(1) |
topic | Primer Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4189500/ https://www.ncbi.nlm.nih.gov/pubmed/25309841 http://dx.doi.org/10.3732/apps.1400070 |
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