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sPARTA: a parallelized pipeline for integrated analysis of plant miRNA and cleaved mRNA data sets, including new miRNA target-identification software
Parallel analysis of RNA ends (PARE) is a technique utilizing high-throughput sequencing to profile uncapped, mRNA cleavage or decay products on a genome-wide basis. Tools currently available to validate miRNA targets using PARE data employ only annotated genes, whereas important targets may be foun...
Autores principales: | Kakrana, Atul, Hammond, Reza, Patel, Parth, Nakano, Mayumi, Meyers, Blake C. |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2014
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4191380/ https://www.ncbi.nlm.nih.gov/pubmed/25120269 http://dx.doi.org/10.1093/nar/gku693 |
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